Shewanella sediminis: Ssed_2852
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Entry
Ssed_2852 CDS
T00596
Name
(GenBank) DNA-directed DNA polymerase
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
sse
Shewanella sediminis
Pathway
sse03030
DNA replication
sse03430
Mismatch repair
sse03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Ssed_2852
03430 Mismatch repair
Ssed_2852
03440 Homologous recombination
Ssed_2852
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sse03032
]
Ssed_2852
03400 DNA repair and recombination proteins [BR:
sse03400
]
Ssed_2852
Enzymes [BR:
sse01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Ssed_2852
DNA replication proteins [BR:
sse03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Ssed_2852
DNA repair and recombination proteins [BR:
sse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Ssed_2852
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNA_pol3_gamma3
DNA_pol3_tau_5
DNAX_ATPase_lid
AAA
AAA_16
RuvB_N
AAA_22
AAA_5
AAA_14
AAA_2
TsaE
PIF1
RCF1-5-like_lid
AAA_assoc_2
AAA_lid_RFC1
AAA_18
AAA_7
Motif
Other DBs
NCBI-ProteinID:
ABV37459
UniProt:
A8FX86
LinkDB
All DBs
Position
complement(3450779..3453646)
Genome browser
AA seq
955 aa
AA seq
DB search
MSYQVLARKWRPATFEQMVGQSHVLHALTNALSQQRLHHAYLFSGTRGVGKTSLARLFAK
GLNCEKGVTASPCGQCSSCIEISEGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRY
KVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQRLPVTVLSRCLQFNLKSLTL
EEIEQQLTHVLSQEQLSFEPQALKLLAKSANGSMRDALSLTDQAIAFGAGQVMLTQVQTM
LGSIDEHHVITLLNALIQGDIENLMQVTAKVLSFGADPQEVLRSLLELLHQITLSQFAPA
AAQLSIYSEQITAFAEQISPEQIQLYYQLLLTGRKDLPHAPDPKSGLEMALLRAVTFVPE
VPVKRWSVAEPATITVPEVKSVSQLERDNVNSNAHPPKEQSSVAGSSADQSLVDSSSNSG
SSEDSPAASQESSDDDSDLLNSLNSEQALILSQASSQGMEQGAAVESPVEAVAVQGVASE
VPKIVETQFVKAEPVETEAAVNDAPAVETLVVDPGANIERKDEEPQSQQLKPSVTDKQSD
DTRQTEAQVTPESVTEQSIPELSVSSPNSMPDEYYAAQDAQFDAQTDAYDDHPQQMDEYL
PFDSLAQGNPGASDSELNQGNSAAVTSPAPDVAEDDILDAVLAARDSLLTELVESEPKES
GGKKPEAERQSFVPPSRKPALSESESNAVDEGVHELGDQVETQEHEGADSQIEDRPPWEE
QESSVSLSGESSKAAEEMLDTSVHDAVKGEESHVEQVAGAHSQTQAQAQSHASTAVLNHS
ESSVSAEQIPAKVVVSGSGEITGHDIDLKWYRLMSALDVGGRVRQLAVNSVCHEFIAPMS
LLLKPNQKHLAADVAIVQLEEALSRALGNETKVAIEVGVDDVRETPLEIRQRFHRELLAE
AQQGLMSDSNIQWLMSQMEAEFENDSLSYNPELLSLKGNTIELIDKSNFKTLTQS
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atgtcatatcaggtgttggccagaaaatggcgccctgctacattcgagcaaatggttggc
cagtcgcatgttttgcatgctttaaccaatgctctttctcagcaaagattacatcatgcc
tatctcttctccggtacccgtggtgtaggcaaaacaagtttagcccgtctgtttgcgaaa
ggactgaattgtgagaagggagttaccgcttctccatgtggtcaatgttccagttgtatc
gagatctctgaggggcgttttgtcgacctcattgaggttgatgcggcctcgagaaccaaa
gtcgatgatacacgtgaactattagataacgttcagtaccgacccagtcgaggacgttac
aaggtttatcttatcgatgaagttcacatgctctccagaagcagttttaatgccctgtta
aagacgcttgaagaacctcccgagcatgttaagttcctgctggctaccactgatccacaa
cgacttccggtcaccgtgttgtctcgctgtctgcaatttaacttaaagagcttaacgctg
gaagagatagaacagcagttaactcatgtgctttctcaagagcaattgagctttgaacca
caagcactgaaattattagcaaaatctgccaatggcagtatgcgtgatgcacttagcctg
accgatcaggcgattgcctttggtgcgggccaagtcatgcttactcaagtacaaaccatg
ttgggtagcatcgatgagcatcacgttattaccttgcttaatgctttgattcaaggtgat
attgaaaatctgatgcaggtaactgctaaggttctctcctttggggctgatccacaggaa
gtgcttcgaagtttacttgagctgttacaccaaattacgctaagccagtttgcgccggcc
gcggctcaactgtcaatttacagtgaacagatcaccgcatttgccgagcagataagtccc
gagcagatccaactctattatcaactgttactgaccgggcgcaaagatcttccccatgcg
ccagatccaaaatccggactcgagatggccttgctaagagccgtgacctttgtaccggaa
gtgccggtcaagcgatggtcggtagcagaaccggcgaccatcactgtacctgaagtgaag
tctgtatctcagctggaacgggataatgttaattcgaacgctcaccctccaaaagagcag
tcttcagtagctggctcttcagcagatcagtctttggtagatagctcatcaaacagtggc
tcttcagaagatagtccggcagcatcgcaggagtctagcgatgatgattcagacttactc
aacagcttaaacagtgagcaagccctgatattgagccaggcttctagtcagggaatggag
cagggcgcagcggtagagtcaccggtcgaagccgttgcagtgcaaggtgtagcgtcagaa
gtgcctaagattgttgaaacacaatttgttaaggctgagcctgttgagacagaagctgct
gtaaacgatgctcctgcggtcgagactcttgtggttgatcctggcgcaaatatagagcgc
aaagacgaagagccgcagtctcagcagcttaagccctcagttacagacaagcaatcagat
gataccaggcaaacagaggctcaggtgacaccggaaagtgtgacagagcaaagcatacca
gagttaagtgtatcgtcgccgaactctatgcccgacgaatattacgccgcgcaagatgct
caatttgatgcacaaactgacgcctatgatgatcatccacagcagatggatgaatatctt
cctttcgactctttagcacagggaaaccccggagcaagcgacagtgagctaaatcagggg
aatagcgctgccgttacatcacccgcaccggacgttgctgaagatgatattttagatgcc
gtcctggccgcccgggactcattgttaacagaattggttgagagtgaacctaaggagagt
ggtggaaaaaagcctgaagcggaacgccagagctttgtgccaccgtctcgaaaaccagct
cttagtgagtccgagtccaatgctgtcgatgagggcgtacatgaactgggtgaccaagtg
gaaactcaggagcatgagggagccgatagtcagattgaagacaggcctccatgggaggag
caagaatcgtcagtttcattgagtggtgagtcatcaaaggctgccgaggagatgcttgat
acatcggttcatgatgccgttaagggtgaggagagtcacgtagagcaagtcgcgggggct
cacagccaaactcaagctcaggctcaaagtcatgcatcgacggcggtcttaaatcacagt
gagtcatcagttagtgccgagcagatccccgctaaagtggttgtatcaggtagtggtgaa
atcaccggccacgatatcgaccttaaatggtatcgtttgatgtcggcactggatgtgggc
ggaagggtcaggcaactcgcggtcaattccgtttgccatgagtttattgctcccatgtca
ttgctattgaagcccaatcaaaagcatttagctgctgatgtcgccatagttcagttagaa
gaagccttaagccgtgcactcggaaacgaaaccaaggtggcgattgaagtgggtgtcgat
gatgtgcgtgagacaccattagagatacgtcagcgttttcacagagagctgcttgccgag
gcccaacaaggcttgatgagtgatagcaatatccaatggctgatgagtcagatggaggct
gaatttgaaaatgatagtttaagttacaaccccgaattgttgagtttaaaaggaaatacc
attgagcttatcgataagtcgaactttaagacgctaactcagtcataa
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