Shewanella sediminis: Ssed_2904
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Entry
Ssed_2904 CDS
T00596
Name
(GenBank) transcriptional regulator, AraC family
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
sse
Shewanella sediminis
Pathway
sse03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Ssed_2904
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sse03000
]
Ssed_2904
03400 DNA repair and recombination proteins [BR:
sse03400
]
Ssed_2904
Enzymes [BR:
sse01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
Ssed_2904
Transcription factors [BR:
sse03000
]
Prokaryotic type
Helix-turn-helix
AraC family
Ssed_2904
DNA repair and recombination proteins [BR:
sse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Ssed_2904
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
HTH_3
DUF6233
Motif
Other DBs
NCBI-ProteinID:
ABV37511
UniProt:
A8FXD8
LinkDB
All DBs
Position
complement(3507757..3509265)
Genome browser
AA seq
502 aa
AA seq
DB search
MDHHLENLSVESCRKARLSKDPRFDGQFFVGVITTGIFCRPICPAVSPQEKNVRYFDSAI
RAVNAGLRPCLRCRPDSAPDSFAWKGTQTTIERALRLIDAGVMSGDNGLSIEALSERLGI
GSRYLRQLFNKHLGTSPKQYAQFRQLMFAKQLLHQTDLPVVQVGLAAGYTSIRRFNEVFK
DTLQLTPTELRKKRSNTQPLAVNDNGSGRGLSLSLQLSYRPPLNWSHLSEFYQLRMVDGM
EWLNDLSYGRTFQLGSAKGFFEAVHHPEKNRFKVTIHLSDTQDIVQLKDIVMQIRRLLDL
DADMNKIQSSLASISLISNQIKEGLRLPGTWSAFEAGCRAILGQQVSVTQATKLLNCMVK
ANGEELSLSGRTLRMFPTPDKLAKANLDELKMPGARKAAINAFSLYVATNPDADLDEWLT
IKGIGPWTVAYAKMRGLSDPNILLCTDLIVKKKVLKMYELDRLSVDAAETGKPVNYGALT
ESLRQQATPWGSYLTFQLWNLT
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atggaccatcacctcgaaaacttaagcgttgaatcttgccgtaaagcgagactatcaaaa
gatccccgtttcgatggccagttttttgttggtgtgatcacgacgggaattttttgtcgg
cctatatgtcctgctgtatcgccacaagagaaaaatgtcaggtattttgactctgcaatt
cgcgccgttaatgctggattaaggccctgcctgcgctgccgccccgatagcgccccagat
tcatttgcatggaaagggacacaaacaacaatagagcgcgcgttgagattaattgatgct
ggtgttatgtctggtgataacggattgagtatagaggctctgtctgaaagattggggatc
ggtagccgatatttacgtcagttattcaataagcatttggggacatcgcctaagcaatat
gcgcaatttcgtcaacttatgtttgcaaagcaattattgcatcaaacagatctacctgtg
gttcaagtcggcttggctgcaggctacaccagcatcaggcgttttaatgaagtattcaaa
gatacattacagttaacgccaacagagctaagaaaaaagagaagtaatacacaaccactc
gcggtgaatgataatggctcaggtagaggactcagtttaagcttacaattatcatatcgg
cctccactaaattggagtcatctgtctgaattttatcaattgagaatggttgatggaatg
gagtggctgaatgacttaagctatggacgtacttttcaattaggctcagctaaaggcttt
tttgaagcagttcaccatccagaaaagaatagattcaaggtcactatccatctgtctgat
actcaagacatagtacagcttaaagatattgtcatgcagatccgcaggttattagacctc
gatgctgatatgaataagatacagagctcgctcgcatcaatctctcttataagcaaccag
ataaaagaggggctcaggttacctggtacctggtctgcattcgaagctggctgtagggcg
atattagggcagcaggtcagcgtcactcaagccactaaattgcttaattgcatggtaaag
gccaatggagaggagttgagtctgtcgggtcggacgcttcgtatgtttcctacgccagat
aagcttgcaaaagccaatttggatgagcttaagatgcctggcgcaaggaaagccgcgatc
aatgcttttagtttatatgtggccaccaacccggatgcagatcttgatgaatggttaacc
attaaagggataggtccctggaccgtagcctatgccaaaatgcgcgggttaagcgacccc
aacattttgttatgtaccgatctgatcgttaaaaagaaggtgctgaagatgtatgagtta
gataggctgtcagtggacgctgcggaaacgggtaagccagtgaattatggtgcattgaca
gagtcacttcgtcagcaggcaacgccctggggcagttatttaacctttcaactatggaac
ctgacatga
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