Shewanella sediminis: Ssed_3070
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Entry
Ssed_3070 CDS
T00596
Name
(GenBank) sigma54 specific transcriptional regulator, fis family
KO
K10941
sigma-54 dependent transcriptional regulator, flagellar regulatory protein
Organism
sse
Shewanella sediminis
Pathway
sse02020
Two-component system
sse02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sse00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Ssed_3070
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Ssed_3070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sse03000
]
Ssed_3070
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
sse02035
]
Ssed_3070
Transcription factors [BR:
sse03000
]
Prokaryotic type
Helix-turn-helix
Other families
Ssed_3070
Bacterial motility proteins [BR:
sse02035
]
Flagellar system
Flagellar assembly proteins
Others
Ssed_3070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
FleQ
Sigma54_activ_2
HTH_8
AAA_16
AAA_5
HTH_50
Mg_chelatase
AAA
AAA_7
bpMoxR
AAA_30
OKR_DC_1_N
AAA_2
Motif
Other DBs
NCBI-ProteinID:
ABV37674
UniProt:
A8FXV1
LinkDB
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Position
complement(3707277..3708710)
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AA seq
477 aa
AA seq
DB search
MMQTDQRILLVGNQSERINRLSCVFEFLGEQVELVAVDKLELRIQNTRFRALVISAETQS
KELLKSLAGTLPWQPILLLGDLTGVTASNILGHIEEPLNYPQLTELLHFCQVFGQAKRPD
IPTSVNQTKLFRSMVGRSDGIAQVRHLISQVASSDATVLVLGQSGTGKEVVARNIHYISE
RRDGPFIPVNCGAIPAELLESELFGHEKGSFTGAISARKGRFELAEKGTLFLDEIGDMPL
QMQVKLLRVLQEKVFERVGGSKSITTDVRVVAATHRDLEDMITNGEFREDLYYRLNVFPI
EMPALCERKDDIPLLLQELVSRVYNEGRGKVRFTQRAIESLKEHAWSGNVRELSNLVERL
TILYPGGLVDVNDLPVKYRHIDVPEYCVEVSEEELERDALASIFSNDEPVDIPETRFPSE
LPPEGVNLKDLLAELEIDMIRQALEQQDNVVARAAEMLGIRRTTLVEKMRKYGMGKD
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgatgcaaacagatcaacgaattctacttgtcggtaaccagtcagagcgaattaatcgc
ttgtcgtgcgtatttgagtttttgggtgagcaagttgagctagtcgcagtcgataagctt
gagctgcgaattcaaaacactcgattcagagccttggttatttcagccgaaactcaatct
aaagagttacttaaatctcttgccgggacattaccctggcagcctatattgttgctcgga
gacttaacgggcgttacagcatctaatattttgggtcatattgaggaacccctcaattat
cctcagttgaccgagctgctacatttctgtcaggtcttcggccaggctaaacgtccggat
attcccaccagtgtcaatcagactaagttattcaggagtatggttgggcgaagtgatggt
attgctcaggttcgtcacttaattagtcaagttgccagctctgatgctacggtattggtg
ttaggtcagtccggtacaggtaaagaggtggtagcccgtaatatccactacatatctgaa
cgtcgcgatggcccatttatcccggtcaattgtggcgcaattcctgcggagcttctggaa
agtgagttgttcggtcatgagaagggatcgtttaccggtgcgattagtgcccgtaaagga
cgcttcgaattagcagagaaaggcactctcttcctggatgagatcggtgatatgcctctg
cagatgcaagtgaaactcttgcgtgtgttacaggagaaggtatttgaacgggtagggggt
tcaaagtcaattactaccgacgttcgtgttgtcgctgcgactcatagagatctggaagat
atgatcactaacggtgagtttcgtgaagatctctattatcgattaaatgttttccctatc
gaaatgcctgccctgtgcgagagaaaagatgatatacctctcttgcttcaggagttagtc
agtcgtgtttataacgaagggcgtggtaaggttcgttttacccaaagagcgatagagtct
ctgaaggagcacgcctggtcaggtaacgtaagagaactctcgaatttagttgagcgcctt
actattctttacccaggcggcttggtcgatgttaatgatcttcctgttaaatatcgtcac
atagatgtacctgaatattgtgtcgaggtgagtgaagaggagctagagcgtgatgcgttg
gcttcgatattcagtaatgatgaaccggtcgatattcctgaaacacgttttccaagcgag
ctacccccggaaggcgttaatctcaaagaccttctcgctgagcttgagatagatatgatt
aggcaagcgttagaacaacaagataatgtcgttgccagagcggctgaaatgttaggtatc
agacgcacgactctcgtcgaaaagatgagaaaatatggcatgggtaaagattga
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