Shewanella sediminis: Ssed_3146
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Entry
Ssed_3146 CDS
T00596
Name
(GenBank) DNA-directed DNA polymerase
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sse
Shewanella sediminis
Pathway
sse03030
DNA replication
sse03430
Mismatch repair
sse03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Ssed_3146
03430 Mismatch repair
Ssed_3146
03440 Homologous recombination
Ssed_3146
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sse03032
]
Ssed_3146
03400 DNA repair and recombination proteins [BR:
sse03400
]
Ssed_3146
Enzymes [BR:
sse01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Ssed_3146
DNA replication proteins [BR:
sse03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Ssed_3146
DNA repair and recombination proteins [BR:
sse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Ssed_3146
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
ABV37750
UniProt:
A8FY27
LinkDB
All DBs
Position
complement(3800129..3803602)
Genome browser
AA seq
1157 aa
AA seq
DB search
MSDPRFVHLRVHSDFSMSDGLAKVKPIIGKVTELGMPAVALTDQTNLCGLVKFYGACHGA
GIKPLIGADFWVKVPGFDKDLCSVTVLAMDNDGYLNLTLLISDAYLRGHIDDRAVIDHGW
LAKYSKGLILLSGGRLGDVGRALLKGNQAQVDSLVEFYQTHFPDRYYLELLRTGRPDEER
YLHMAVELATEKGLPVVATNQVVFNSPDLFEAHEIRVAISDGFTLADPRRPKKYSAEQYF
KSSEQMCELFEDIPEAIDNTVEIAKRCNVTVRLGEYFLPNFPTGDLSIEDFLVEVSEKGL
EERLEFLFPDPEVRAEKRPAYDERLDVELKVVNQMGFPGYFLIVMEFIQWGKDQDIPIGP
GRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDIDFCMDRRDEVIDHVAE
LYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMVPAEPGMTLAKAFEVEPA
LQESYDADEEVKDLIDMCRTLEGVTRNAGKHAGGVVISPTTITDFAPIYCDAEGLNPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALQMINPKLKRLGKDPVRIESIPLDDPASFRLL
QRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGREA
VSYPDAEYQHESLQWVLEPTYGIILYQEQVMQIAQVLAGYSLGGADMLRRAMGKKKPEEM
AKQRGTFEEGAINNGIDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA
EFMAAVMSADMDNTDKIVILVDECERMGMPLLPPDVNKGLLKFNVDDEGKIVYGIGAIKG
VGDGPVESILSARKDGPFKDLFDFCARVDLKKLNKRIMEKLICAGALDNLGPHRAAMLAT
LPEAIRAADQNAKAEAIGQHDMFGLLNSDPEDVKQQFVECTPWPDKVWLEGERETLGLYL
TGHPINQYLKELKHYTSGRLKDVHPTERGKTMKAAGLVVATRVMMTKRGSKMGLVTLDDK
SARLEVMLFTEAFEKFNHLLETDRILIIEGEVSFDDFSGGNRMTARNIIDMGEARSHFAK
GVEVDIDAEAIDLPWLETFKEAVEPWKNGAVPVVVNYAQSQAKAQFRLGESWRVNPTDEL
MLALETLTGAGKVRILF
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatccccgtttcgtgcatctgcgtgttcacagtgacttttctatgtcagatggt
ttggcgaaggttaaacccatcatagggaaagtaacagaactcggcatgccagctgtggca
ctgaccgatcagactaacctgtgtggcttggtcaagttctatggtgcctgccacggagcc
gggatcaagccgctaatcggcgccgatttttgggtcaaggtgccgggatttgataaagat
ctgtgttctgtgaccgttttggctatggataacgatgggtatttgaacttaaccttactt
atcagcgatgcctatctcagaggtcatatagatgatagagcagtcatagaccatgggtgg
ctagctaaatacagtaaaggattgatcttgctctccggtggcagactcggggatgttggg
cgggcactgttgaaagggaatcaggcccaagtagactcattagtcgagttttatcagaca
cactttcccgaccgatattatctggagttattgcgtaccggtcgtcccgatgaggagcgc
tacctgcatatggcggtagagcttgctactgagaaaggtttacctgtcgtcgccactaat
caggtggtctttaatagtcctgatctgttcgaagctcatgagatccgtgtggctatctca
gatggttttaccctggccgatcctcgccgtccgaagaagtacagcgccgagcagtatttc
aagagcagtgagcagatgtgtgagttgtttgaagacattcccgaagcgattgataatacg
gttgagatagctaagcgctgcaatgttaccgttcggctcggcgagtatttcctgcctaac
ttccctacaggagatctgagcattgaagacttcctggtcgaagtgtctgagaaggggctc
gaagagcgattagagtttctctttcccgaccctgaggtgagggctgagaaacgacctgcg
tatgatgagcgtctcgatgtcgaacttaaggtcgttaaccagatggggttccccggctac
ttcctcatcgtgatggagtttattcagtgggggaaagatcaggatattcctatcggtccg
ggtcgtggttccggtgccgggtccctggttgcatatgccctcaaaatcaccgatctcgat
cccttggaatatgagctgctgttcgagcgattcctgaacccggaacgtgtttctatgccg
gatttcgatatcgatttctgtatggataggcgagatgaggtgatcgaccatgtggccgaa
ctctacggccgagatgcggtatctcaaattattaccttcggtactatggccgcaaaagcg
gttattcgcgatgtaggacgtgtcttaggtcacccttatggtttcgttgaccggatatcg
aaaatggtgccagccgagcccggaatgactctggcgaaggcgttcgaggtggaacctgca
ctgcaggagtcatacgacgccgatgaggaggtgaaagaccttatcgacatgtgccgcacc
ttagaaggtgtcacgcgtaacgcgggtaagcacgccggtggtgtggtgatctcacccacc
actattaccgattttgcgccaatttattgtgatgccgaaggtcttaatccggtgactcag
ttcgataagaacgacgtcgagaccgccggtttagttaagttcgacttcttggggctgcga
accctgacgattatcgattgggcgttgcagatgatcaatcccaaactgaagaggctgggc
aaagatcctgtgcgtatcgagtcgattccactggacgatcctgccagcttcaggttattg
cagcgttatgagacgacggcggtattccagcttgaatctcgtggaatgaaagacttgatt
aagcgtcttcagccggattgcttcgaagatatgatcgcactggtcgccctgttcagacca
ggaccgcttcaatcgggcatggtagataactttattgagcgtaagcatggccgtgaagcc
gtctcttatcccgatgctgaatatcaacatgagtcgctgcaatgggtactcgagcccacc
tacggcattatcctctatcaagagcaggtgatgcagattgctcaggttctcgcgggatac
tcactgggtggggcggatatgcttcgccgtgctatgggtaagaaaaagcccgaggagatg
gccaagcagcgtggtaccttcgaagagggcgcgattaataatggtatcgacggtgaactg
tcgatgaagatcttcgatctggtggaaaaattcgcgggttacgggtttaacaaatctcac
tctgcggcttatgctttggtttcctaccaaactctctggctgaagacgcattatccggcc
gaatttatggcggcggtaatgtctgccgatatggataacacagataagatcgttatctta
gtcgatgagtgtgagcgcatgggcatgcctctgctaccgcctgatgttaacaagggactg
ctaaaattcaacgtcgatgatgaggggaaaattgtctacggcattggcgcgattaaaggg
gtgggtgatgggccggtagagtcaattttgtcggctcgaaaagatggtccatttaaagac
ctattcgatttttgtgctcgtgtggatctgaaaaagctcaataaacgtatcatggaaaag
ctgatctgtgccggagccctggataatctgggccctcaccgcgccgctatgctagcaact
ttacccgaggcgattcgggcggcagatcaaaatgctaaggccgaagctatcggtcaacat
gatatgttcggtttgctcaatagcgatcctgaagatgtgaaacagcaatttgttgaatgt
accccttggcccgataaggtgtggttggaaggcgagcgggagacattaggcctgtatctg
acgggccacccgattaatcagtacctgaaagagttaaagcattatacgtcgggacgcctt
aaggatgtgcatcctaccgagcgtggcaagaccatgaaggcggcgggcttagtggttgcg
acccgtgtgatgatgactaaacgtggttctaagatggggcttgtgacgcttgacgataag
agtgctcgtttagaggtgatgctatttaccgaggcgttcgagaagtttaatcacctgctg
gagaccgaccgcattttaatcatcgaaggtgaggtgagcttcgacgatttttccggtggg
aaccgtatgacggccagaaatatcatcgatatgggtgaggccagaagccatttcgccaaa
ggtgtcgaggtcgatatagatgcagaagctatcgatctgccctggttggagacatttaaa
gaagccgttgagccatggaaaaatggtgccgtgcccgtggtcgttaattacgcgcaatct
caagccaaggctcagttcaggctcggtgagagttggcgggtaaacccgaccgatgagttg
atgctggcgttggagaccttaacgggggccggtaaggtgaggatccttttttaa
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