Shewanella sediminis: Ssed_3384
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Entry
Ssed_3384 CDS
T00596
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sse
Shewanella sediminis
Pathway
sse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ssed_3384
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sse03019
]
Ssed_3384
03016 Transfer RNA biogenesis [BR:
sse03016
]
Ssed_3384
Enzymes [BR:
sse01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Ssed_3384
Messenger RNA biogenesis [BR:
sse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Ssed_3384
Transfer RNA biogenesis [BR:
sse03016
]
Prokaryotic type
tRNA degradation factors
Ssed_3384
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
OB_RRP5_4th
KH_2
S1_RRP5
S1_2
KH-I_KHDC4-BBP
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
ABV37988
UniProt:
A8FYR5
LinkDB
All DBs
Position
complement(4123013..4125127)
Genome browser
AA seq
704 aa
AA seq
DB search
MVHVNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKFEEPGRDFFP
LTVNYQEKTYAAGKIPGGFFKREGRPSESETLIARLIDRPIRPLFPNGFKNEVQVIITVV
SVDPEINPDVISMIGTSAALAISGLPFNGPLGVARVGYTDGEYVLNPNVSQLVDSDLDLI
VAGTQGAVLMVESEAAALPEEVMLGGVVYGHDQQQVVISAINELKAEASKPAWDWTAPVQ
DADLVAKIKDLAEAEMAAAYQIEVKQDRYTQVGVVKSAAKEALLAENPEADLREIDGLLG
SLEKQVVRSRIIAGNPRIDGREPDMVRGLNVMAGVLPRTHGSALFTRGETQALVTCTLGT
ERDAQKVDSIMGEYTNRFMLHYNFPPYSVGETGFVGSPKRREIGHGKLAWRGINAVMPSA
EEFPYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVL
SDILGDEDHLGDMDFKVAGTRDGITALQMDIKIEGINKEIMQIALQQAYGARVHILNVMD
QAIGEHRDDISDHAPRITTLKINPEKIRDVIGKGGATIRALTEETGTTIELEDDGTVKIA
SANGDATKEAIRRIEEITAEVEVGTIYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEER
VANVSDYLQVGQEVKVKVMEVDRQGRVRLSMKEAAPKAEAAPAE
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atggttcacgtgaatccaatcgtaaagagttttgaatatggtcagcacacagtcacgcta
gagactggtgttattgcacgtcaagccgatgccgccgttttggcaagtatgggtgatacc
acagtattggttactgttgttgggaagaaatttgaagagccaggtcgtgacttttttcca
ctaactgttaattaccaggaaaagacttacgctgcgggtaagatccctggtggttttttc
aagcgtgaaggccgtccatctgaaagcgaaacattgattgcccgccttattgaccgtcca
atccgtccactattcccaaatggcttcaagaatgaagttcaggtaattatcacagtagtt
tctgtcgatcctgaaatcaaccctgatgttatttcgatgattggtacttcagctgcattg
gctatatctggtctgcctttcaatggcccactaggtgtggcacgtgttggttatactgac
ggcgaatatgttcttaacccgaatgtcagtcaacttgttgatagtgatcttgacctgatt
gttgccggtactcaaggtgctgtcttgatggttgagtctgaagcggctgcacttccagaa
gaagtgatgttaggtggtgttgtttacggacacgaccagcagcaagttgttatcagtgcc
attaacgagctaaaagctgaagcaagcaagcctgcatgggattggacagctccagttcaa
gacgcagaccttgttgctaaaattaaagatttagccgaggccgagatggccgctgcttac
caaattgaagttaagcaagatcgttacactcaagttggcgttgtaaagtctgctgctaaa
gaagcattattggctgaaaacccagaagctgatttgcgcgaaatcgacggccttcttggt
agcttagagaagcaagtagtacgtagccgtattattgccggcaacccgcgtatcgatggt
cgtgaacctgatatggttcgtggcttgaacgtgatggctggtgtactgccacgtacccac
ggtagtgctttgttcactcgtggtgaaactcaggcactagtgacttgtactctaggtacg
gagcgtgatgctcagaaagttgacagcatcatgggcgagtacactaaccgctttatgctg
cactataacttccctccatattctgttggtgaaacaggttttgttggttcacctaagcgt
cgcgaaattggtcacggtaagctagcatggcgcggtatcaatgccgttatgccttctgct
gaagagttcccatacagcgttcgtgttgtatctgaaatcactgaatcaaacggttcaagc
tctatggcttctgtttgtggtacttcacttgctcttatggatgcgggtgtaccaattaag
acctctgttgctggtatcgctatgggtctggttaaagaaggtgacgatttcgtcgttctt
tctgacatcttgggtgatgaagatcatcttggtgatatggactttaaagttgctggtact
cgtgatggtattactgcactgcagatggatatcaagattgaaggtatcaataaagagatc
atgcagatcgcattgcagcaagcctatggcgcacgtgttcatatcctgaatgttatggac
caggctatcggtgagcaccgtgatgatatctctgatcacgctccacgtatcacaacgctt
aagattaaccctgagaagatccgtgacgtgattggtaaaggtggtgcaactatccgcgca
cttaccgaagagacgggtacaactatcgaacttgaagatgacggtaccgttaagatcgca
tctgcaaacggtgatgcaacgaaagaagcaatccgtcgtatcgaagagatcactgcagaa
gttgaagtcggtactatctacaatggtaaagttgttcgtatcgttgatttcggtgcgttc
gttactattcttccgggtaaagatggtctggttcatatctctcagattgctgaagagcgt
gtagctaacgtatctgactacctacaagtaggtcaggaagtgaaggttaaggtgatggaa
gtcgatcgccagggccgtgtacgtctttctatgaaagaagctgcgcctaaagctgaagca
gctccagccgagtaa
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