Shewanella sediminis: Ssed_3387
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Entry
Ssed_3387 CDS
T00596
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
sse
Shewanella sediminis
Brite
KEGG Orthology (KO) [BR:
sse00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sse03016
]
Ssed_3387
Enzymes [BR:
sse01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
Ssed_3387
Transfer RNA biogenesis [BR:
sse03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
Ssed_3387
Prokaryotic type
Ssed_3387
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
Motif
Other DBs
NCBI-ProteinID:
ABV37991
UniProt:
A8FYR8
LinkDB
All DBs
Position
complement(4128231..4129196)
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AA seq
321 aa
AA seq
DB search
MARRPRGRFIDGILLLDKDTGMSSNFALQRVKRIFNAAKAGHTGALDPLATGMLPICLGE
ATKFSQHLLDADKRYTVTAKLGERTDTSDSDGEVVQTRPVNFSQELLMESLDYFRGETMQ
VPSMYSALKYQGQPLYKYAREGIEVPREARPINVFELNFISLEGDELTLDIHCSKGTYIR
TITDDLGEMLGCGAHVIMLRRTQVAEYPYERMVSLEQLNEMVAKAEAEEIEPKTVLDPLL
LPMDTAVSKFKEINLSDNVAPYLMNGNPVQAPVIDGLDDGEIVRITIGDEHKFVGIGSMN
GDGLLAPKRLIVVRDPSSESN
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
atggctcgtcgtcctcgtggtcgctttatcgatggaatactactcctggataaagataca
ggcatgagttcgaactttgctctgcagagggtaaagcgcatttttaatgcagctaaagcg
ggccataccggtgcgctggacccattagcaacgggcatgcttcctatctgccttggagag
gcgacaaagttctctcagcatcttcttgacgccgataagcgatataccgtaacggctaag
cttggggaacgaacggataccagtgattctgacggcgaagtggtacagacccgtcccgtt
aattttagccaagagctattgatggagtcattggattactttcgtggtgaaaccatgcaa
gtcccttccatgtactcggcgctcaagtatcaaggtcaacctctgtataaatatgcccgt
gaaggcatagaggttcccagagaggcacgtccaatcaatgtatttgagcttaactttatc
agcctggaaggcgatgagttaacgctggatattcattgctctaaagggacttatattcgc
actatcaccgatgatcttggtgagatgttaggttgtggcgctcatgtgatcatgttacgc
agaacgcaggttgctgaatatccttacgagcgtatggtcagccttgagcagcttaacgag
atggtggccaaagccgaggctgaagagatagagcctaaaactgtgctggaccccctgtta
ttgcctatggacacggctgtcagcaagtttaaggaaattaacttatctgacaacgttgcg
ccatatttgatgaacggaaaccctgttcaagcgcctgtaatcgatgggcttgatgacggg
gaaatagttcggatcaccattggcgatgaacataaatttgttggtattggttctatgaat
ggtgatggcttattagcacctaaacgcttgattgtggtgcgtgatccatcttctgagtca
aactga
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