Shewanella sediminis: Ssed_3823
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Entry
Ssed_3823 CDS
T00596
Name
(GenBank) transcriptional regulator, NifA subfamily, fis family
KO
K12266
anaerobic nitric oxide reductase transcription regulator
Organism
sse
Shewanella sediminis
Brite
KEGG Orthology (KO) [BR:
sse00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sse03000
]
Ssed_3823
Transcription factors [BR:
sse03000
]
Prokaryotic type
Helix-turn-helix
Other families
Ssed_3823
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
GAF
AAA_5
Mg_chelatase
GAF_2
AAA
AAA_2
MCM
AAA_16
AAA_7
AAA_22
AAA_14
Motif
Other DBs
NCBI-ProteinID:
ABV38427
UniProt:
A8G004
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Position
4658242..4659795
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AA seq
517 aa
AA seq
DB search
MALSQTELTHIALDITSGLSNRDRFSRLLDIIRQNLNCDAAALLAFQGQQFIPLAIDGLN
ADVLGRRFLVDEHPRLEAIARAGDIVRFPADSDLADPYDGLIPNQGDELKVHACIGLPLY
ADERLIGAITIDGFDPDQFQKFTNNELRSLSAIAAVSLSNALMIDRLEKAAFQSQDSGTA
MSTDITTDNDVEMIGQSQNMQSLNNEINVVASTDLNVLILGETGTGKELIAKAVHQGSER
KKSPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFELADKGTLFLDEIGELPLT
LQAKLLRVLQYGDIQKIGDDRSRKVDVRIIAATNKDLKQEILAGRFRADLYHRLSVFPLM
VPPLRERDDDITLLCGYFVERCRQKLGIKNLSLNPTSLSLLKQYDWPGNIRELEHALHRA
AVLAKSQAVNDLPQILPQHFDIPGQPQKDKVQLPGEISSPFQSSFTGSLKDATDEFQAQY
IRHALAENQTQWAATARQLKVDSGNLHRLAKRLGLKK
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atggccttgagtcaaacagagctaacccatatcgcactcgatatcacctcgggcctgtct
aatcgagaccggttttctcgcctactcgatatcatacgccaaaacctcaactgtgatgcc
gcagctttgctcgccttccagggccagcagtttattcctcttgccatagatggactcaat
gccgatgtgctgggacgccgctttcttgtggatgaacatcccagactagaagcgattgcc
cgcgccggcgatatcgtcaggttccccgccgatagcgatcttgcggatccctatgatggc
ttgatcccaaatcagggagatgagcttaaggttcatgcctgcatcggtctgcctctctat
gccgatgagcgtttaatcggtgccatcactatcgacggcttcgatcccgaccagtttcag
aagttcaccaataacgaactgagaagcctcagtgcaattgccgcagtctcactgagcaac
gcactaatgatagacaggctcgaaaaagcggcgtttcagtcacaagactctggcacggca
atgagtaccgatatcacgaccgataacgatgtagagatgataggccagtctcagaatatg
cagtcactcaataatgagattaacgtcgtcgcctcgaccgatcttaatgtactgatctta
ggtgaaacaggaacgggtaaagaacttatcgccaaggcggtacatcagggttcggaacgt
aaaaagtcccctctggtctacctcaactgcgccgcactgccagagtctgtcgccgagagt
gagctctttggtcatgtaaaaggggcttttaccggcgctatcagtaatcgcagcgggaaa
tttgagttggccgacaagggcaccctgttcctggatgaaattggtgagctgcccctgacc
ttgcaggctaaactgctcagggtccttcagtatggtgatattcagaaaattggcgatgat
cgcagccgcaaggtcgatgtaagaattattgccgccaccaataaagatcttaaacaggag
atcctggcgggacgctttcgtgccgatctctaccacagactcagtgtttttccgctgatg
gtgccaccgctgcgtgaacgagacgatgatattactctcctgtgtggatactttgtcgag
cgatgcaggcaaaaactaggcataaaaaacttaagcctcaatccaacaagcctgagcctt
ttgaaacaatatgattggccgggaaatattcgggaactggaacacgcactccaccgtgcg
gccgtattggcgaagtcacaggcggtcaatgatctgccccaaatccttcctcaacacttc
gatataccgggacagcctcaaaaggataaggtccaactccccggcgagatttcgagccct
tttcaaagctcattcacgggcagtctgaaggatgccaccgatgagtttcaggcgcaatat
atccgacatgcattggccgaaaaccagactcaatgggcggcaacggcacgtcagctcaag
gtcgactcaggcaatttgcatcgattagcaaaacggctggggctcaagaagtag
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integrated database retrieval system
