Shewanella sediminis: Ssed_3851
Help
Entry
Ssed_3851 CDS
T00596
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sse
Shewanella sediminis
Pathway
sse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ssed_3851
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sse03019
]
Ssed_3851
Enzymes [BR:
sse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Ssed_3851
Messenger RNA biogenesis [BR:
sse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Ssed_3851
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
UvrD-helicase
HI1480
ERCC3_RAD25_C
DUF3110
DUF8086
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
ABV38455
UniProt:
A8G032
LinkDB
All DBs
Position
4696231..4697772
Genome browser
AA seq
513 aa
AA seq
DB search
MHARQSHWLHEFCCFKAPRDQSMSFTSLGLSAPILKAVAQKGYDTPSPIQAQAIPAVLEG
KDVMAAAQTGTGKTAGFTLPLLELLTRGNRAQAKQVRALVLTPTRELAAQVAESVETYGK
NLPLRSAVVFGGVGIGPQISKLGKGVDILVATPGRLLDLFNQRALNFNQLEVLILDEADR
MLDMGFIHDIKKILKVLPAKRQNLMFSATFSDDIRKLAKGLVNNPVEISVTPRNATAKTV
EQYIYQVDQKQKTAALIHLIKQNDWKQVLVFSRTKHGANRIAKNLEANDLTAAAIHGNKS
QGARTKALANFKSGEVRVLVATDIAARGIDIDQLPNVVNFDLPNVPEDYVHRIGRTGRAG
ADGQAVSLVSGDESKLLRDIERLIKQKIPRKEVEGFVPTQVVAETDLNERKHGQNRGPRN
ANGRGNGRSNSGSRNNDSRGNASRGSSRNDSRSESSQGGRVEHKDGQRSGDSARGHKPND
KNSSHSRSRRPSGQSTSSAPASKPSSNSSIWGK
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgcacgcccgccagagtcactggctccatgaattctgctgttttaaagcaccgagagac
caatctatgagttttacctccctggggttatcagccccgatattaaaagctgttgcccaa
aaaggttacgatactccttcacctatccaagctcaggcaattcccgctgtgttggaaggc
aaggatgtgatggccgcagctcaaacaggtacaggtaaaacggcaggctttactctgcca
ctattagagctattaaccagaggcaatcgtgctcaagctaaacaagttcgcgcgctggta
ttaaccccgactcgtgaactcgcggcccaggtcgccgagagtgtagagacttatggtaaa
aacctgcctctacgttcggcagttgtcttcggtggtgtaggtattggcccacagatatct
aagttaggcaaaggcgtcgatattctggttgcgactccggggcgtctgctggatctattt
aatcagcgagccctgaatttcaatcaactggaagtgttgatcctcgatgaagccgaccgc
atgttagatatgggctttattcatgacatcaagaaaattcttaaggtattgccagcgaag
cgccagaacctgatgttctcggcaaccttctctgatgatatccgtaaactggccaaaggc
ttagtgaacaacccggtagagatctcggtaacgccacgtaacgctacggcaaaaaccgtc
gagcagtatatctatcaggtcgatcagaagcagaaaaccgctgcgctgatccatctgatc
aaacaaaatgactggaaacaggtattagtattcagccgcactaaacatggtgcaaaccgt
atcgctaagaacctcgaagctaatgacctcaccgcagctgccatccacggtaacaagagc
caaggcgcacgtactaaggccttagctaactttaagagtggtgaagtgcgcgtgttagtc
gccaccgatattgccgcccgaggtatcgatatcgatcagctacctaatgtggttaacttc
gacctgccaaatgtacccgaggattatgttcatcgtatcggccgtacaggacgtgccggc
gccgatggtcaagcggtttcgcttgtcagcggtgatgaaagtaagctgctcagagatatt
gagcgtctgattaagcaaaaaattcctcgcaaagaagttgaaggctttgtgccgactcaa
gttgtcgccgaaaccgatcttaatgagagaaaacatggtcaaaaccgtggtccacgcaat
gccaacggcagaggcaatggtcgctcaaactccggttcaagaaacaatgactctcgtggc
aatgcttcacgtggctcatcgcgtaacgactctcgtagtgaaagcagtcaaggtggcaga
gtagaacataaagacggtcaacgcagtggtgattctgctcgcgggcataagcccaacgac
aagaactcaagccatagccgttcacgcagaccttcgggtcaatcaacttcgagtgcgcct
gcgtctaagccaagttcaaatagcagcatctggggtaagtaa
DBGET
integrated database retrieval system
