Shewanella sediminis: Ssed_3896
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Entry
Ssed_3896 CDS
T00596
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
sse
Shewanella sediminis
Brite
KEGG Orthology (KO) [BR:
sse00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sse03016
]
Ssed_3896
Enzymes [BR:
sse01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
Ssed_3896
Transfer RNA biogenesis [BR:
sse03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
Ssed_3896
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
ABV38500
UniProt:
A8G077
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All DBs
Position
4765585..4766259
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AA seq
224 aa
AA seq
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MKRLFLGISPNALQLEQLLKIQAALFEAGDKERTLVGRDADKNSGSHQYTCVGRRVNKQN
FHMTLAFLGAVSDEMQAQLESTLDSFYAINASQWPSFDVTLDTLTLWRKPQVLCLSGKAD
DPNLQIAVDRCRYAAKEAGLFSGKTNKTKTSDELTFTPHITLFRKAKRIPEDHLPQTGLL
QSELMEKSLIPVTLSPQQMHLYESLSTAKGVEYRILRSWALVKA
NT seq
675 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagattatttttaggcatatcacccaatgcgctgcagctcgaacaactgctcaag
atccaggccgcccttttcgaagctggtgataaagagaggactttggtggggcgagatgcc
gacaaaaactctggtagccatcaatacacatgcgtcggtcgcagggtcaacaagcagaat
tttcacatgacgctcgccttcttaggagccgtcagcgatgagatgcaagcgcaactggag
tcgacactggacagcttctacgccatcaacgccagccaatggccctccttcgatgtaaca
ttagatacactgacgctctggcgaaaacctcaggtgctctgtctgtcgggaaaagcggat
gacccgaatctgcaaatagcagtagacagatgcagatatgccgctaaagaggctgggctt
ttcagcggtaaaacaaacaagactaagacaagtgatgagcttacctttaccccacatatc
accctatttagaaaagcaaagaggatacctgaggatcatctgccgcaaacggggttatta
cagtccgaattaatggaaaagtcactcatacctgtgacactctcgccacagcagatgcac
ctctacgagtcgctcagcacagctaagggagttgaatatcgtatcttgcgatcctgggca
ctggttaaagcctaa
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