Shewanella sediminis: Ssed_4025
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Entry
Ssed_4025 CDS
T00596
Name
(GenBank) single-strand binding protein
KO
K03111
single-strand DNA-binding protein
Organism
sse
Shewanella sediminis
Pathway
sse03030
DNA replication
sse03430
Mismatch repair
sse03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Ssed_4025
03430 Mismatch repair
Ssed_4025
03440 Homologous recombination
Ssed_4025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sse03032
]
Ssed_4025
03400 DNA repair and recombination proteins [BR:
sse03400
]
Ssed_4025
03029 Mitochondrial biogenesis [BR:
sse03029
]
Ssed_4025
DNA replication proteins [BR:
sse03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
Ssed_4025
DNA repair and recombination proteins [BR:
sse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Other MMR factors
Ssed_4025
TLS (translesion DNA synthesis) factors
Other SOS response factors
Ssed_4025
Mitochondrial biogenesis [BR:
sse03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial DNA replication factors
Other Mitochondrial DNA replication factors
Ssed_4025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SSB
SSB_1
tRNA_anti-codon
DUF2457
Motif
Other DBs
NCBI-ProteinID:
ABV38629
UniProt:
A8G0K6
LinkDB
All DBs
Position
complement(4930999..4931694)
Genome browser
AA seq
231 aa
AA seq
DB search
MASRGVNKVILVGNLGKDPEVRYMPNGNAVANFTVATSESWKDQQGQPQERTEWHNIVMY
RRLAEIAGEYLKKGSKVYIEGKLQTSKWQDQSTGQDRYKTEINANEMQMLDSRGQGGGQQ
GGYGQQQGQQQQNQYNAPQQQAPQQGYAPKPQQAPQQAPQQGYAPKPQQAQQQAPAQQSA
YAPKPQQAPQQAPQQAAPQQRPAPQPQQPAQQPQQNFTPDLDDGWDDDIPF
NT seq
696 nt
NT seq
+upstream
nt +downstream
nt
atggccagtcgtggtgtcaataaggtaattttggtcggtaacttagggaaagaccctgaa
gttcgttacatgccaaatggcaatgccgtagccaactttacagtggcgacgagtgagtct
tggaaagaccaacaaggtcagccacaagagcgtacagagtggcataatatcgttatgtat
cgtcgcttagcagaaattgcaggcgagtaccttaagaaaggttctaaggtatatatcgaa
ggtaaattgcaaaccagcaagtggcaggatcagtctaccggtcaagatcgctacaagaca
gagatcaatgctaacgaaatgcagatgctcgatagccgtggtcaaggtggcggacagcaa
ggtggctatggtcaacagcagggtcagcaacagcagaaccagtacaatgcacctcagcag
caggctccgcagcaaggttatgcacctaagccgcagcaagcccctcagcaggctccacag
caaggttatgcacctaagccgcagcaagcacaacagcaagctcctgcacagcaatcagct
tatgcgccaaagcctcagcaagcaccacagcaagcaccacagcaagcggctccgcaacag
cgtccagcgcctcagcctcaacagccagcgcagcagcctcagcagaacttcactcctgac
ctggatgatggttgggatgatgatatcccgttttag
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