Shewanella sediminis: Ssed_4167
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Entry
Ssed_4167 CDS
T00596
Name
(GenBank) transcriptional regulator, LysR family
KO
K02521
LysR family transcriptional regulator, positive regulator for ilvC
Organism
sse
Shewanella sediminis
Brite
KEGG Orthology (KO) [BR:
sse00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sse03000
]
Ssed_4167
Transcription factors [BR:
sse03000
]
Prokaryotic type
Helix-turn-helix
LysR family
Ssed_4167
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LysR_substrate
HTH_1
HTH_30
HTH_24
PBP_like
GntR
MarR
Xre-like-HTH
HTH_AraC
HTH_23
TnsD
PrpR_N
Fe_dep_repress
Motif
Other DBs
NCBI-ProteinID:
ABV38771
UniProt:
A8G0Z8
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Position
5125011..5125883
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AA seq
290 aa
AA seq
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MDIKTIKLYLHLTESLHFSRTAQAMHVSPSTLSRAMQRLEDEVGAKLLQRDNRSVALTSA
GVEYRHFAEQTLDHWTKLKTKIDPKQDLLRGKLNLYCSVTAAYSHLPGLLDRFRREHPLV
EIALTTGDAANAVSEVRNNRADIAIAALPDPFPDNLHFAKIDDIPLVIIAPTFRCRVQEL
LTESYIPWDRLPFIVPEHGPGRRRTDNWFKQLGLSPNIYAQVSGQEAIASMVALGCGVSI
TPEVVITNSPVRDRIQIIPTPIAIPPFELGCCCRNKRLDDPIVAAFLKVV
NT seq
873 nt
NT seq
+upstream
nt +downstream
nt
ttggatataaaaaccatcaagctttacctgcaccttactgagagcctccacttttcccgt
accgctcaggccatgcacgtcagtccgtcgaccctgagcagggcaatgcaaagattagaa
gatgaggtaggcgctaaactgcttcaacgggataaccgaagtgtcgcgctaaccagtgca
ggcgttgaatatcgccactttgccgaacagactctggatcattggaccaagctaaaaacc
aagatagatcccaagcaagacctgctcaggggcaagctcaacctctactgttcggtgacc
gccgcctatagtcacctaccggggttactcgatagattcagacgcgagcacccattggtc
gaaatcgcactgaccacaggtgatgcggccaatgccgtcagtgaggtgagaaataaccgc
gccgatatcgccattgccgcactgccggatccctttcccgacaatctgcatttcgcaaaa
attgatgatattccactggtcatcatcgcccccacatttcgctgtcgggtgcaggagtta
ctgacagaatcctatatcccatgggatcgcctcccctttatcgtccccgaacacggaccg
ggaagacgtcgaaccgacaattggtttaaacagcttggcttatcacccaatatttatgct
caggtatcggggcaggaggccatcgcctctatggtggcactaggctgcggagtcagtatc
actccggaagtggttatcaccaacagtccggttcgcgatagaattcagataatcccgact
cccatcgcgatcccgcctttcgagttaggctgctgttgcagaaacaagcgattagacgac
cccatagtggccgcatttcttaaggtggtttaa
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