Shewanella sediminis: Ssed_4323
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Entry
Ssed_4323 CDS
T00596
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sse
Shewanella sediminis
Pathway
sse03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sse00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Ssed_4323
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sse03021
]
Ssed_4323
03400 DNA repair and recombination proteins [BR:
sse03400
]
Ssed_4323
Enzymes [BR:
sse01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Ssed_4323
Transcription machinery [BR:
sse03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Ssed_4323
DNA repair and recombination proteins [BR:
sse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Ssed_4323
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
ABV38927
UniProt:
A8G1F4
LinkDB
All DBs
Position
complement(5289761..5293978)
Genome browser
AA seq
1405 aa
AA seq
DB search
MKDLLKFLKQQSKTEEFNGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVIEPGMTSLERGQMLTEENYLDALEEYGDEFEAKM
GAEAVLELLRAIELEKEIEMMREELPSINSETRRKKITKRLKLVEAFFQSGNKPEWMILK
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREVPEVWDVLDDVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RSLMMSTNNILSPANGEPVITPSQDVVLGLYYTSRECVNGKGEGMVFESVDEVEKAYRTK
FAAIHARVKVRITETNIDENGERSESRRIVDTTVGRALLSRILPKGLSYDLVNQNMGKKQ
ISKLLNTCYRQLGLKDTVIFADQLMYAGFHYATVSGASVGINDMVIPDEKYTLVADAEAE
VLEIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMENLSSETVINREGVPEKQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVSQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGTFEGLTMKPLIEGGDVVEPLRERVL
GRVVAIDVMYPGTEKVLAPRNTLLDEAWCDLLEEHSVDEMIVRSVISCDTDFGVCKACYG
RDLARGHIINQGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKNAGTVKL
HNAKHVTNSEGKLVIVSRSSEIAIIDELGREKERYKVPYGTILEKLEEASVAAGEIIANW
DPHTHPIISEVAGSIKFVDMLDGVTMTRQTDELTGLSSIVVMEVGQRPTAGKEMRPAIRL
VGADGNDLMIPGTEVPAQYFLPANAIVNQDDNAPINVGDALARIPQESSKTRDITGGLPR
VADLFEARKPKEPAILAEYSGTISFGKETKGKRRLVITPADGSEAYEEMIPKWRNLNVFE
GEKVERGEVIADGAEAAHDILRLRGIHKVANYIVNEVQDVYRLQGVKINDKHIEVIIRQM
LRKCEITNAGDSQFLAGEQAEVSRVKIANRELEAQGKQPATFERELLGITKASLATESFI
SAASFQETTRVLTEAAVGGKSDKLRGLKENVIVGRLIPAGTGYSYHQKRNAAAAAGTTTE
AAPAISASEAEQNLADLLNLAGSSD
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaacagcaaagcaagaccgaagagtttaacggcatt
aagattggcctagcgtcgccagatctaatccgttcttggtcatttggtgaagttaagaag
ccagaaaccattaactaccgtacctttaagcctgagcgtgaaggcttattctgtgcgcgt
atttttggtccagtaaaagattacgaatgtttatgcggtaagtataagcgtcttaagcac
cgtggtgtgatctgtgaaaagtgtggcgttgaagttacacagactaaagtacgtcgtgag
cgtatgggtcacatcgatctcgctagcccagtagcccatatctggttcttgaagtcactg
ccgtctcgtatcggtttgatgctggatatgactctgcgtgacatcgaacgcgttctttac
ttcgaatctttcgttgtaatcgagcctggcatgaccagccttgagcgcggccagatgttg
acagaagaaaactacctggatgcactcgaagagtacggtgatgagtttgaagccaagatg
ggtgctgaagcagttctagaattgctacgcgctatcgagcttgaaaaagagattgagatg
atgcgcgaagagttgccatcaatcaactctgagactcgtcgtaagaagatcactaagcgt
cttaagcttgttgaggcattcttccaatcgggcaacaagcctgagtggatgatccttaaa
gtcttgccggttcttccaccagatctacgtccactagttccactggatggcggtcgtttt
gctacgtctgatctgaacgatctttatcgtcgtgtgatcaaccgtaacaaccgtcttaag
cgtctgttagatctagctgcgccagatatcatcgtacgtaacgaaaagcgtatgttgcaa
gaatctgtcgatgcgctattagataacggtcgtcgtggtcgtgcaattacgggttctaac
aagcgtccgcttaaatctttggccgatatgatcaaaggtaagcaaggtcgtttccgtcag
aacttgctaggtaagcgtgtggattattctggtcgttcggtaattaccgtaggtccaaca
cttcgcttacatcagtgtggtcttcctaagaagatggcactcgagctatttaagcctttc
atctatggcaagctagaaggtcgtggtcttgctactacgattaaagctgctaagaagatg
gttgagcgtgaagtacctgaagtttgggatgttcttgacgatgttattcgtgaacaccct
gtaatgctcaaccgtgcgccaacactgcacagactgggtattcaagcgtttgagcctgta
ttgattgaaggtaaagctattcagcttcatcctttggtttgtgcggcctacaacgccgac
ttcgatggtgaccaaatggctgtacacgtgccgctaacgctggaagctcagctagaagca
cgttcgcttatgatgtcaaccaacaacatcctttcgccagcaaacggcgagccggttatc
acaccgtcacaggacgttgtattaggtctgtattacaccagccgtgagtgcgttaacggc
aaaggcgaaggcatggtgtttgaatcagtcgatgaagtcgaaaaggcttaccgtactaag
ttcgcagcaatccatgctcgcgtaaaagtacgtatcactgaaactaatatcgatgaaaat
ggtgagcgttcagaatctcgtcgtatcgttgatacaacggttggtcgtgcactgctttct
cgcattctgccgaaagggttgtcatatgatctggttaaccagaacatgggcaaaaagcag
atctctaagctgttgaacacttgttaccgtcaactaggtcttaaagataccgttatcttt
gcagatcaattgatgtatgccggtttccattatgcgactgtatcgggtgcctctgtaggt
atcaatgatatggttattccagatgagaagtacactctggttgccgatgccgaggctgaa
gttcttgaaattcaagagcagttccaatcgggtctggttaccgccggtgagcgctataac
aaggtcatcgatatctgggcaagtgcgaacgagaaagtctctaaggccatgatggaaaac
ctgtcttctgagacagtgattaaccgtgaaggtgtgcctgagaagcaagagtcattcaac
agcatctatatgatggcagactcgggcgctcgtggtagtgctgcacagattcgtcagtta
gcgggtatgcgtggtctgatggctaagccggatggctcaatcatcgaaacaccgattgta
gctaacttccgtgaaggtctaaacgtatctcagtactttatctctactcacggtgcgcgt
aagggtcttgccgatacggcacttaagacagctaactcgggttacttgactcgtcgtctt
gtagacgttgcacaggatcttgtagttatcgaagatgactgtggcaccttcgaaggtctg
acaatgaagcctctcatcgagggtggtgatgttgttgagccattgcgtgagcgtgtactt
ggtcgtgttgttgctatcgatgtgatgtatccaggtactgagaaggtacttgcacctcgt
aacactctgcttgatgaagcttggtgtgacttgttggaagaacattcagtcgatgagatg
atcgttcgttcagttatcagctgtgatacagactttggtgtttgtaaagcctgttatggt
cgtgatttggctcgtggtcatatcattaaccaaggtgaagcaatcggtgttgttgctgct
cagtcaattggtgagccaggaacacagctaacgatgcgtaccttccacattggtggtgcg
gcgtctcgagcttctgctgaaaacaacgttcaagttaagaacgctggtactgttaagctg
cataatgctaagcacgtgactaacagcgaaggcaagttagttatcgtttctcgttcttct
gagatcgccattattgacgaacttggtcgtgagaaagagcgttacaaggtgccatacggt
actattctggaaaagcttgaagaagcgtctgtagcggctggcgaaatcatcgctaactgg
gatccacatactcacccaattatttctgaagtagcgggtagtattaagttcgttgatatg
cttgatggcgtcactatgacacgtcaaacagatgagctgacaggtctttcttcaatcgtg
gttatggaagtgggtcaacgtcctactgccggtaaagagatgcgtccagcgattcgtctg
gttggtgccgatggcaacgacttgatgatcccaggaacagaggttcctgcgcaatacttc
ttaccagctaacgcgattgtgaatcaagatgataatgcaccaattaacgttggtgatgca
ttagcacgtattccgcaagaatcgtcaaagacccgtgatattaccggtggtctacctcgc
gttgccgacttgttcgaagcgcgtaagccaaaagagccagctattcttgctgagtactca
ggtactatctcgtttggtaaagagactaaaggtaagcgtcgtcttgtgatcacgcctgct
gatggtagcgaagcttatgaagagatgattcctaagtggcgtaacctgaatgtgttcgaa
ggtgaaaaagtcgaacgcggtgaggttattgctgatggtgctgaagcagcacatgacatc
ttgcgtctacgtggcattcataaggttgctaactacatcgttaatgaagttcaagacgta
tatcgtctacagggcgtaaagattaacgataagcatatcgaagtgattattcgccagatg
cttcgtaagtgtgaaatcactaacgctggtgatagtcagttccttgctggtgaacaggct
gaagtgtctcgtgttaagatcgcaaaccgcgaacttgaagcgcaaggcaagcaacctgca
acattcgaacgtgagcttcttggtattaccaaggcgtctctggctacagagtcatttatc
tctgcagcatcgttccaggaaacgacacgcgtactgaccgaagcggcagtaggcggtaag
agtgataagctacgcggtcttaaagagaacgtgattgttggtcgtcttatccctgcgggt
actggttattcatatcaccagaaacgtaatgcagcagctgcagccggtacaactaccgaa
gcggcacctgcaattagcgcaagtgaagcggaacagaacctggcagatcttctaaatctt
gccggaagttcagattaa
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integrated database retrieval system
