Streptomyces secundicynarae: ABZO29_23425
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Entry
ABZO29_23425 CDS
T11405
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ssec Streptomyces secundicynarae
Brite
KEGG Orthology (KO) [BR:
ssec00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssec03019
]
ABZO29_23425 (hrpA)
Enzymes [BR:
ssec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ABZO29_23425 (hrpA)
Messenger RNA biogenesis [BR:
ssec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ABZO29_23425 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_19
WHD_HA2
AAA_22
nSTAND3
SLFN-g3_helicase
T2SSE
NACHT
nSTAND_NTPase5
PhoH
ResIII
AAA_30
AAA_25
TsaE
NTPase_1
MetJ
AAA_16
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
XCW11065
LinkDB
All DBs
Position
complement(5086008..5090021)
Genome browser
AA seq
1337 aa
AA seq
DB search
MSTHPASALGTLAPRLTELSLRDAHRLGRRLEGARKIRKPEARAAVLAEIDAEIERAEER
MGERRGRVPAVKYPEQLPVSQKKSEIAEAIRDHQVVIVAGETGSGKTTQIPKICLELGRG
VRGMIGHTQPRRIAARTVAERVAEELSTALGEAVGWKVRFTDQVNPDATFIKLMTDGILL
AEIQTDRELRAYDTIIIDEAHERSLNIDFLLGYLAQLLPKRPDLKVVITSATIDPERFSR
HFGDAPIVEVSGRTYPVEVRYRPLLEEDSDDSDRDQITAITDAVEELMAEGQGDILVFLS
GEREIRDTADALTKKQYTRAGGADWQATEVLPLYARLSHAEQHRVFQPHTGRRIVLATNV
AETSLTVPGIKYVIDPGFARISRYSHRTKVQRLPIEPISQASANQRKGRCGRTSDGICVR
LYSEDDFVTRPEFTDAEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHRNIRDGVQLLQ
ELGALDPDQKDPRKRLTQTGRKLAQLPVDPRLARMVLEADRNGCVREVMVIAAALSIQDP
RERPADKQAQADQQHARFRDETSDFLAYLNLWRYIREQQKERGSSSFRRMCKQEYLNFLR
IREWQDIYTQLRTVAKQMGIHLNEEDAPADSIHVSLLAGLLSHIGMKDVKESKESKDSGG
RRDGGRGEYLGARNAKFAIFPGSTLFKKPPRFVMSAELVETSRLWARVNAKIEPEWVEPL
AEHLLKRTYSEPHWEKDQAAVVAYEKVTLYGVPIVAQRKVNYGRIDPETSRELFIRNALV
EGDWRTHHKFFADNRKLLTEVEELEHRARRRDILVDDETLFDFYDERVPEHVVSGAHFDS
WWKRKRHEQPDFLDFEREMLIRESAEAVTKADYPDSWRQGNLKFRVTYQFEPGADADGVT
VHIPLQVLNQVTDEGFDWQIPGLREELVTELIRSLPKPIRRNYVPAPNYAKAFLEKAAPL
QEPLTTTMARELKRMVGVPFEASDFDWAKVPEHLRVTFRIVDERRRKLAEDKDLETLRLQ
LKPRARKALSQAAAATAERQGGESLERKGLTDWTIGTLTRVFETRRAGQPVKAYPALVDD
GPTANTVSVRLYDTEAEQAEAMWKGTRRLILRNIPVNPAKFASEKLTNAQKLALSANPHG
SIQALFDDCAMAAADRLIADFGGPAWDEESYRKLYDKVRAEIVDTTVRTVAQVQQVLAAW
QACERRLKAVRSPALLANLTDVRKQLDALVKPGFVTEAGLRRLPDLMRYLVAADRRLQQM
PANVQRDTTRMEKVQEMQDEYAWLLEQMPRGRPVPSSVLDIRWMIEELRVSYFAHALGTA
YPVSDKRIVKAIDAAVP
NT seq
4014 nt
NT seq
+upstream
nt +downstream
nt
atgtctacgcatcctgcctccgccctcggcaccctcgccccccgcctgaccgagctctcc
ctgcgcgacgcgcaccgactcggccggcggctcgagggcgcgcgcaagatccgtaagccg
gaggcccgcgccgccgtcctcgccgagatcgacgccgagatcgagagggccgaggagcgc
atgggcgaacggcgcggacgcgtgcccgccgtcaagtaccccgagcagctccccgtcagc
cagaagaagagcgagatcgccgaggccatccgcgatcatcaagtcgtcatcgtggccggt
gagaccggctccggcaagacgacccagatccccaagatctgtctggagctcgggcgcggc
gtgcgcggcatgatcgggcacacccagccccgccgtatcgccgcccgtaccgtcgccgag
cgggtcgccgaggagctgagtaccgcgctgggcgaggccgtcggctggaaggtgcggttc
accgaccaggtgaacccggacgccaccttcatcaagctcatgaccgacggcatcctgctc
gccgagatccagaccgaccgcgagctgcgcgcctacgacacgatcatcatcgacgaggcc
cacgagcggtccctcaacatcgacttcctgctgggctatctcgcccagctgctcccgaag
cggcccgacctcaaggtcgtcatcacctccgcgaccatcgaccccgagcgcttctcccgg
cacttcggcgacgcgcccatcgtcgaggtcagcggccgtacctaccccgtcgaggtccgc
taccgccctcttctcgaagaggactccgacgactccgaccgggaccagatcaccgccatc
acggacgccgtcgaggagctcatggccgagggccagggcgacatcctcgtcttcctctcc
ggggagagggagatccgcgacaccgccgacgcgctcaccaagaagcagtacacccgcgcc
ggaggcgccgattggcaggccaccgaggtcctgcccctgtacgcccggctctcccacgcc
gagcagcaccgcgtcttccagccccacaccggccgcaggatcgttctggcgaccaacgtc
gccgagacctccctcacggtcccgggcatcaagtacgtcatcgatcccggcttcgcccgg
atcagccggtacagccaccgcaccaaggtgcagcggctccccatcgagccgatctcccag
gccagcgccaaccagcgcaagggccgctgcggacgtaccagcgacggcatctgcgtccgc
ctctacagcgaggacgacttcgtcacacggccggagttcacggacgcggagatcctccgt
acgaacctggcgagcgtcatcctccagatgaccgccgcgggcctcggcgacatcgagaag
ttccccttcatcgacccgccggaccaccgcaacatccgcgacggcgtccagttgctgcag
gagctcggggcgctcgacccggaccagaaggacccccgcaaacggctcacgcagaccggc
cgcaagctggcccagctgcccgtcgacccgcgcctggcccgcatggtcctggaggccgac
aggaacggctgtgtccgcgaggtcatggtcatagcggccgcgctctccatccaggacccg
cgcgagcgccccgccgacaagcaggcccaggccgaccagcagcacgcccgcttccgggac
gagacgagcgacttcctcgcctacctcaacctctggcgctacatccgcgagcagcagaag
gagcgcggctcgtcgtccttccgccggatgtgcaagcaggagtacctcaacttcctgcgc
atccgcgagtggcaggacatctacacccagctgcgcacggtcgcgaagcagatgggcatc
catctcaacgaagaggacgcgcccgccgacagcatccacgtctccctcctcgccggcctg
ctctcgcacatcgggatgaaggacgtgaaggagtcgaaggagagcaaggactccggcgga
cgcagggacggcggccgaggcgagtacctcggcgcccgcaacgccaagttcgcgatcttc
cccggctcgaccctgttcaagaagccaccgcgcttcgtgatgtccgccgaactcgtcgag
acctcccgcctctgggcccgcgtcaacgcgaagatcgagccggagtgggtcgagcccctg
gccgagcacctcctcaagcggacgtacagcgaaccgcactgggagaaggaccaggcggcg
gtggtggcgtacgagaaggtcacgctgtacggcgtgccgatcgtcgcccagcggaaggtc
aactacgggcgtatcgacccggagaccagccgcgagctgttcatccgcaacgcgctcgtc
gagggcgactggcgcacgcaccacaagttcttcgccgacaaccgcaagctcctcaccgag
gtcgaggagctggagcaccgcgcccggcgccgggacatcctggtcgacgacgagacgctg
ttcgacttctacgacgagagggtcccggaacacgtggtgtccggcgcccacttcgactcc
tggtggaagcgcaagcggcacgagcagccggacttcctggacttcgagcgggagatgctc
atccgggagtcggcggaggcggtcaccaaggcggactatccggactcgtggcgccagggc
aacctcaagttccgtgtgacgtaccagttcgagccgggtgcggacgcggacggcgtgacc
gtccacatcccgctgcaggtgctcaaccaggtcaccgacgagggcttcgactggcagatc
ccggggctgagggaggaactggtcaccgagctgatccgctccctcccgaagccgatcagg
cgcaactacgtgcccgctcccaactacgcgaaggcgttcctggagaaggcggccccgctg
caggagccgctcaccacgaccatggcccgcgagctgaagcgcatggtgggcgtcccgttc
gaggcgtccgacttcgactgggccaaggtccccgaacatctgcgcgtcaccttccggatc
gtcgacgagcggcgccgcaagctggccgaggacaaggacctggagacacttcggctccag
ctgaagccgagggcgcggaaggccctctcgcaggcggcggccgccaccgccgagcggcag
ggcggtgagtccctggaacgcaagggcctcaccgactggaccatcggcacgctcacccgt
gtcttcgagacccgccgggccggccagccggtgaaggcgtacccggcgctggtcgacgac
ggaccgacggcgaacaccgtttccgtacgcctctacgacacggaggccgagcaggcggag
gcgatgtggaagggtacgcggcggctcatcctgcgcaacatcccggtgaaccccgcgaag
ttcgcgtccgaaaagctgaccaacgctcagaagctggcgttgtcggcgaatccccacggt
tcgatccaggctctgttcgacgactgcgcgatggcggcggcggaccggctgatcgcggac
ttcgggggaccggcgtgggacgaggagtcgtaccggaagctgtacgacaaggtgcgcgcg
gagatcgtcgacacgacggtccgtacggtggcgcaggtgcagcaggtgctcgccgcctgg
caggcctgtgagcgccgtctgaaggccgtacggagccctgcgctgctcgcgaacctcacg
gacgtacgcaagcagctggacgccctcgtgaagcccggcttcgtgacggaggcggggctg
cggcggctgccggacctgatgcgttacctggtggccgcggaccggcgtctgcagcaaatg
ccggcgaacgtccagcgggacacgacgcgtatggagaaggtccaggagatgcaggacgag
tacgcgtggctgctcgagcagatgccgcgggggcggcccgtcccctcgtcggtcctggac
atccgctggatgatcgaggagcttcgggtcagctacttcgcccacgcgctcggcacggcg
taccccgtctccgacaaacggatcgtgaaggcgatcgacgcggcggtcccgtga
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