Streptomyces secundicynarae: ABZO29_33050
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Entry
ABZO29_33050 CDS
T11405
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ssec Streptomyces secundicynarae
Pathway
ssec03030
DNA replication
ssec03430
Mismatch repair
ssec03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ssec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABZO29_33050 (dnaE)
03430 Mismatch repair
ABZO29_33050 (dnaE)
03440 Homologous recombination
ABZO29_33050 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssec03032
]
ABZO29_33050 (dnaE)
03400 DNA repair and recombination proteins [BR:
ssec03400
]
ABZO29_33050 (dnaE)
Enzymes [BR:
ssec01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ABZO29_33050 (dnaE)
DNA replication proteins [BR:
ssec03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ABZO29_33050 (dnaE)
DNA repair and recombination proteins [BR:
ssec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ABZO29_33050 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Tsr1_G-like
Motif
Other DBs
NCBI-ProteinID:
XCW12796
LinkDB
All DBs
Position
7271226..7274765
Genome browser
AA seq
1179 aa
AA seq
DB search
MSKPPFTHLHVHTQYSLLDGAARLKDMFNACTEMGMTHIAMSDHGNLHGAYDFYHSAKKA
GITPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTIWAANATGLHNLFRL
SSDAYAEGWLQKWPRMDKETIAQWSEGLIASTGCPSGELQTRLRLGQYDEAVKAAADYQD
IFGKDRYFLELMDHGIEIERRVRDGLLDIGKKLGIPPLVTNDSHYTYAHEAGAHDALLCI
QTGKNLSDPDRFKFDGTGYYLKSTDEMYAIDSSDAWQEGCRNTLLVAEQIDTTGMFEKRD
LMPKFDIPEGYTEVSWFREETMRGMARRFPDGIPDDRMKQVEYEMDTIISMGFPGYFLVV
ADFIMWAKKQGIAVGPGRGSAAGSIVAYALGITDLDPIPHGLIFERFLNPERISMPDVDI
DFDERRRVEVIRYVTEKYGADKVAMIGTYGTIKAKNAIKDSARVLGYPYAMGDRLTKAMP
ADVLGKGIPLSGITDPQHPRYSEAGEIRAMYENEPDVKKVIDTAKGVEGLVRQMGVHAAG
VIMSSETITEHVPVWVRHTDGVTITQWDYPSCESLGLLKMDFLGLRNLTIMDDAVKMVKS
NKGIDIDLLGLPLDDPTTFELLQRGDTLGVFQFDGGPMRSLLRLMKPDNFEDISAVSALY
RPGPMGMNSHTNYALRKNKQQEITPIHKELEEPLEEVLAVTYGLIVYQEQVQKAAQIIAG
YSLGEADILRRVMGKKKPDELAKNFTIFQAGARKNGYSDEAIQALWDVLVPFAGYAFNKA
HSAAYGLVSYWTAYLKANHPAEYMAALLTSVKDDKDKSAVYLNECRRMGIKVLPPNVNES
ESNFAAQGDDVILFGLSAVRNVGTNVVEAIIRCRKAKGKYASFPDYLDKVEAVVCNKRTT
ESLIKAGAFDSMGHTRKGLTAQYEPMIDNVVAVKRKEAEGQFDLFGGMGEEDTSEPGFGL
DVEFTTDEWDKTYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAGIAQLTGGEHADGAVV
TIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFPATYQLVSTQLVEDAVVFVKGRL
DKREDVPRLVAMELMVPDLSNAGTNAPVILTIPAVKVTPPMVSRLGEILSHHKGDSEVRI
KLQGPTKTTVLRLDRHRVKPDPALFGDLKVLLGPSCLAG
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgaagccgccgttcacgcacctgcacgtccatacccagtactcgctgctggacggt
gccgcgcggctcaaggacatgttcaacgcgtgtaccgagatgggcatgacccacatcgcc
atgtccgaccacggcaacctccacggggcgtacgacttctaccactcggcgaagaaggcc
ggaatcaccccgatcatcgggatcgaggcgtatgtcgcccccgagtcccggcgcaacaag
cgcaagatccagtggggtcagccgcaccagaagcgtgacgacgtgtccggttcgggtggt
tacacgcacaagacgatctgggcggcgaacgcgaccggcctgcacaacctcttccggctc
tcctcggacgcgtacgccgagggctggctgcagaaatggccccgcatggacaaggagacc
atcgcccagtggtccgaggggctcatcgcctccaccggctgcccctccggcgagctccag
acccggctgcgcctcggccagtacgacgaagccgtgaaggccgccgccgactaccaggac
atcttcggcaaggaccgctacttcctggagctgatggaccacggcatcgagatcgagcgc
cgggtccgcgacgggctcctcgacatcggcaagaagctcggcatccccccgctggtcacc
aacgactcgcactacacgtacgcgcacgaggcgggcgcgcacgacgcgctgctgtgcatc
cagaccggcaagaacctctccgaccccgaccgcttcaagttcgacggcaccggctactac
ctgaagtccacggacgagatgtacgccatcgattcctcggacgcctggcaggagggctgc
cgcaacacgctcctggtcgccgagcagatcgacaccacgggcatgttcgagaagcgcgac
ctgatgcccaagttcgacatccccgagggctacaccgaggtcagctggttccgcgaggag
accatgcgggggatggcccgccgcttcccggacggcatcccggacgaccgcatgaagcag
gtcgagtacgagatggacaccatcatctcgatgggcttcccggggtacttcctcgtcgtc
gccgacttcatcatgtgggccaagaagcagggcatcgcggtcggccccggccgaggctcc
gccgcgggctcgatcgtggcctacgccctcggcatcaccgacctcgacccgatcccgcac
ggcctgatcttcgagcgcttcctcaaccccgagcgcatctcgatgcccgacgtcgacatc
gacttcgacgagcgccggcgcgtcgaggtcatcaggtacgtgacggagaagtacggcgcc
gacaaggtcgccatgatcggcacgtacggcaccatcaaggccaagaacgcgatcaaggac
tccgcgcgcgtcctgggctacccgtacgcgatgggcgaccgcctcaccaaggccatgccc
gccgacgtcctcggcaagggcatcccgctctccggcatcaccgacccgcagcacccgcgg
tacagcgaggcgggcgagatccgcgcgatgtacgagaacgagccggacgtgaagaaggtc
atcgacaccgccaagggcgtcgagggcctggtccggcagatgggtgtgcacgccgccggc
gtgatcatgtccagcgagaccatcaccgagcacgtgcccgtctgggtccggcacaccgac
ggcgtgaccatcacgcagtgggactatccgagctgcgagtcgctcggcctgctgaagatg
gacttcctcggcctgcgcaacctgacgatcatggacgacgccgtcaagatggtgaagtcc
aacaaggggatcgacatcgatctcctcggcctcccgctggacgaccccacgacgttcgaa
ctgctccagcgtggcgacaccctcggcgtcttccagttcgacggcggccccatgcgctcg
ctgctgcgcctgatgaagccggacaacttcgaagacatctccgccgtttcggccctgtac
cgcccgggcccgatgggcatgaactcccatacgaactacgcgctgcgcaagaacaagcag
caggagatcacgccgatccacaaggagctggaggagcccctcgaagaggtcctggccgtc
acctacggcctgatcgtctaccaggagcaggtgcagaaggccgcccagatcatcgccggg
tactcgctcggcgaggccgacatcctccggcgcgtcatgggcaagaagaagcccgacgaa
ctggcgaagaacttcaccatcttccaggccggcgcccgcaagaacggctacagcgacgaa
gcgatccaggccctgtgggacgtgctggtccccttcgccggctacgcgttcaacaaggcg
cactcggccgcctacggcctcgtctcgtactggaccgcctacctcaaggcgaaccacccc
gccgagtacatggccgcgctcctgacctccgtcaaggacgacaaggacaagtcggccgtc
tacctcaacgagtgccgtcgcatgggcatcaaggtgctcccgccgaacgtcaacgagtcc
gagtcgaacttcgccgcccagggcgacgacgtgatcctcttcggcctctccgcagtccgc
aacgtcggcacgaacgtcgtcgaggcgatcatcaggtgccgcaaggccaaggggaagtac
gcgtccttcccggactacctcgacaaggtcgaggcggtggtctgcaacaagcggacgacg
gagtcgctgatcaaggcaggcgccttcgactccatggggcacacccgcaagggcctcacc
gcgcagtacgagccgatgatcgacaacgtggtcgcggtcaagcgcaaggaggccgagggc
cagttcgacctcttcggcggcatgggcgaggaggacaccagcgagcccgggttcggactc
gacgtggagttcaccaccgacgagtgggacaagacgtatctgctcgcccaggaacgcgag
atgctcggtctgtacgtctccgaccacccgctcttcggcctggaacacgtgctgtccgac
aaggccgacgcgggcatcgcccagctcaccggaggtgagcacgccgacggcgcggtcgtc
accatcggcggcatcatctcggggctgcagcgcaagatgaccaaacagggcaacgcctgg
gcgatcgccacggtcgaggacctcgccggttccatcgagtgcatgttcttcccggcgacc
taccagctggtgtcgacccaactcgtcgaggacgcggtcgtgttcgtcaagggccgcctc
gacaagcgcgaggacgtgccgcggctcgtcgcgatggagctcatggtccccgacctgtcc
aacgccggcaccaacgcgcccgtgatcctgaccatcccggcggtcaaggtcaccccgccg
atggtcagccgcctcggcgagatcctcagccaccacaagggcgacagcgaggtccggatc
aagctccagggaccgaccaagacgacggtgctgcgcctcgaccggcaccgggtgaagccg
gatccggccctgttcggcgacctgaaggtactgctcggaccgtcctgtctggcgggctga
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