Sphingomonas sediminicola: H9L14_02690
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Entry
H9L14_02690 CDS
T07077
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ssed
Sphingomonas sediminicola
Pathway
ssed03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ssed00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
H9L14_02690 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssed03021
]
H9L14_02690 (rpoC)
03400 DNA repair and recombination proteins [BR:
ssed03400
]
H9L14_02690 (rpoC)
Enzymes [BR:
ssed01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
H9L14_02690 (rpoC)
Transcription machinery [BR:
ssed03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
H9L14_02690 (rpoC)
DNA repair and recombination proteins [BR:
ssed03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
H9L14_02690 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Hpf1_C
Motif
Other DBs
NCBI-ProteinID:
QNP46176
LinkDB
All DBs
Position
complement(484568..488842)
Genome browser
AA seq
1424 aa
AA seq
DB search
MNELTPFANPIAKPETFDEIKIGIASPDKIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVSKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERILYFESYVVLEPGLTPLEKNQLLTEDELLNAQDEYGEDAFSAG
IGAEAVKIMLMDLDLEGERKELLDELAVTKSELKPKKIIKRLKVVESFIDSGNRPEWMIL
EVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRML
QEAVDALFDNGRRGRTITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYSRLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYLSLEKEDEPGQGMLLSDMTEVHQALAA
GAVTLHTKIVSRVPQTDEEGNTYMKRFETTAGRMLLGETLPKSHKVPFETVNRVLTKKEI
GDVIDIVYRHTGQKETVLFADAIMALGFRHAFKAGISFGKDDMVIPADKVKLVEETRALV
KDYEQQYQDGLITQQEKYNKVIDAWSRCGDQVASAMMKEISATPKRPDGRQADLNSIYMM
AHSGARGSQAQIKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLAD
TALKTANSGYLTRRLVDVSQDAVIIEDDCGTDRALEMRAIVQGGATIASLGERVLGRTTA
EDVVDSKTGDVVIPEGTLLDEAMVAQIEAIGLQGVKIRSPLVCASKQGVCAKCYGRDLAR
GTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNEQSNLEAPVDGTIEFRDMPTI
TDPRGRHISLSRSGEIAILDMDGRELSTHRVPYGAHLLCETGHIVTKGDRIAEWDPSFSP
VITERAGTVKYQDLIENRTMTEQVDESTGIAQRVVTDDMAKSKKDSLHPRLTLTGDKAEE
AGVYRLAAGAIVAIEDGQKVEAGEVLARMPREAARTRDITGGLPRVAELFEARTPKDKAI
IARVSGRVNFLKDYKAKRKIAIVPDDGSTPHEELVPKSRVIEVQEGDYVKRGDNLVGGSP
DPHDILEALGVEALAEYLVSEIQEVYRLQGVKINDKHIEVIVRQMLQKVEITDDGDTTFL
KGEQVDREEMDEVNSRLDKKKKPAEGKPVLLGITKASLQTRSFISAASFQETTRVLTEAA
VQGKVDTLTGLKENVIVGRLIPAGTGSSMKELRVAASSRDAALRATHRRMQEALVAPNSA
EELRAAEKARSPRDDTAGTGEDPLAEVVPSGHGTDADAGDYLTE
NT seq
4275 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaactgacgcctttcgcaaatccgatcgccaagccggagacgttcgacgagatc
aagatcggcattgcgagcccggacaagattcgcagctggtctttcggcgaaatcaagaag
ccggagaccatcaactaccgcacgttcaagccggagcgtgacggcctgttctgcgcgcgc
atcttcggtccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagtac
aagggaatcgtctgcgagaagtgcggcgtggaagtgaccgtttcgaaggtccgccgcgag
cgcatgggtcatatcgagctcgccgctccggtcgcccacatctggttcctgaagtcgctt
ccgagccgcatcggcctgctgctcgacatgcagctgaagcagctcgagcgcatcctctac
ttcgagagctatgtcgttcttgagccgggcctgaccccgctcgagaagaaccagctcctc
accgaggacgagcttctcaacgcgcaggacgaatatggcgaagacgccttctccgccggc
atcggcgccgaagccgtcaagatcatgctcatggatctcgacctcgaaggcgagcgcaag
gaactgctcgatgaactcgcggtcaccaagtcggagctgaagccgaagaagatcatcaag
cgcctgaaggtcgtcgagagcttcatcgattccggcaaccgtccggaatggatgatcctc
gaggtcattccggtcatcccgccggagcttcgccccctggttccactggacggcggccgc
ttcgcgacttcggacctcaacgacctgtatcgccgcgtcatcaaccgtaacaaccgtctg
aagcggctcatcgagctgcgcgctccggacatcatcgtccgtaacgagaagcgcatgctt
caggaagcggtcgacgctctgttcgacaacggccgccgcggccggacgatcacgggcgcc
aacaagcgtccgctgaagtcgctgtccgacatgctgaagggcaagcagggccgcttccgg
cagaacctgctcggcaagcgcgtcgactattcgggccgctccgtcatcgtgaccggtccg
gagctcaagctgcaccagtgcggcctgccgaagaagatggcgctcgagctgttcaagccg
ttcatctactcgcgcctcgacgccaagggtctttccatgaccctcaagcaggcgaagaag
tgggtcgagaaagagcgcaaggaagtctgggacatcctggacgaggtaatccgcgagcac
ccggttctcctgaaccgcgctccgacgcttcaccgtctcggtatccaggcgttcgagccc
gtactgatcgaaggcaaggcgatccagcttcacccgctggtttgcgccgcgttcaacgcc
gacttcgacggcgaccagatggcagtgcacgtcccgctgagcctcgaggcccagctggaa
gcgcgcgtcctgatgatgtcgaccaacaacatcctgtcgcccgcgaacggcaagccgatc
atcgtgccgtcgcaggacatggttctgggcctctactacctcagccttgagaaagaggat
gagccgggccagggcatgcttctgtccgacatgaccgaggtccaccaggctctcgcagcc
ggtgccgtgacgcttcatacgaagatcgtcagccgcgtcccgcagacggacgaggagggc
aacacctacatgaagcggttcgagacgaccgcgggacgcatgctcctgggcgagaccctt
ccgaagagccacaaggtgcccttcgagacggtcaaccgcgtcctgaccaagaaggagatc
ggcgacgtcatcgacatcgtctatcgtcacaccggtcagaaggagacggtcctgttcgcc
gacgccatcatggcgctcggtttccgtcacgctttcaaggcgggcatttccttcggcaag
gacgacatggtcatccccgccgataaggtgaagctggtcgaggagacgcgtgcactcgtg
aaggattacgagcagcagtaccaggacggtctgatcacccagcaggaaaagtacaacaag
gtgatcgacgcctggtcgcgttgcggtgaccaggtcgcatccgcgatgatgaaagagatt
tcagcgacgccgaagcgccctgacggtcgccaggcggacctgaactccatctacatgatg
gcccactcgggcgctcgtggttcgcaggctcagatcaagcagcttgccggcatgcgcggc
ctgatggccaagccgtcgggcgagatcatcgaaactccgatcatctcgaacttcaaggaa
ggcctgaccgtccttgagtacttcaactcgacccacggcgcccgcaagggcctggccgac
acggcgctcaagactgcgaactcaggttacctgacccgccgtctggtcgacgtttcgcag
gacgccgtgattatcgaggacgactgcggcaccgaccgtgcgcttgaaatgcgcgcgatc
gtgcagggcggcgccaccatcgcttcgctcggcgagcgcgtcttgggccgtacgacggcc
gaggacgtcgtcgactcgaagaccggcgatgtggtcatccccgagggtacccttctcgac
gaggcgatggtcgcccagatcgaggcgatcggcctgcagggcgtgaagatccgctccccg
ctggtctgcgcttcgaagcagggcgtctgcgccaagtgctacggccgcgacctcgctcgc
ggtacgccggtgaacatcggtgaggctgtcggcgtcattgccgcccagtcgatcggtgag
ccgggcacccagctgacgatgcggacctttcacatcggcggcgcggcgcagctcaacgag
cagtcgaacctcgaagcgccggtcgacggcacgatcgagttccgtgacatgccgacgatc
accgacccgcgcggccggcacatctcgctgtcgcgttcgggcgagatcgcgatcctcgac
atggatggccgcgagctgtcgacgcaccgcgttccgtacggcgctcatctgctgtgcgag
accggtcacatcgtcaccaagggcgatcggatcgccgaatgggatccgtcgttcagcccg
gtcatcaccgagcgggccggcacggttaagtaccaggatctcatcgagaaccggaccatg
accgagcaggtcgacgagtccacgggtatcgcccagcgcgtcgtcaccgacgacatggcg
aagtcgaagaaggattcgctgcatccgcgcctgaccctgaccggcgacaaggcagaagag
gcgggcgtctatcgcctggccgccggcgccatcgtcgcgatcgaggacggccagaaggtc
gaggccggcgaagtgctcgcccgtatgccgcgcgaagctgcaaggacgcgcgacatcacc
ggcggtctgccgcgtgttgccgagctgttcgaggcccgcacgcccaaggacaaggcaatc
attgcccgggtctcgggtcgtgtgaacttcctcaaggactacaaggccaagcggaagatc
gcgattgttcctgacgatggctcgactccgcatgaggagctggtgcccaagtcgcgcgtg
atcgaggtgcaggaaggcgactacgtcaagcgcggtgacaacctcgttggcggttctccg
gacccgcacgacattctggaagctctcggcgtcgaggcgctcgcagaatacctcgtgagc
gagatccaggaggtctatcgactgcagggcgtgaagatcaacgacaagcacatcgaggtg
atcgttcgccagatgctgcagaaggttgagatcaccgacgacggcgacaccacgttcctg
aagggcgagcaggtcgatcgcgaggagatggacgaggtcaattcgcggctcgacaagaag
aagaagcccgcggaaggcaagccggtgctgctcggcatcaccaaggcgagcctgcagacc
cgcagcttcatctcggcggcatctttccaggagacgacgcgagtgctcaccgaagcggcc
gtgcagggcaaggtcgacacgctcaccggtctcaaggagaacgtgatcgtcggacgcctg
atcccggcgggcaccggctccagcatgaaggagctccgggttgcggcatcgagccgtgac
gcggctctccgtgcgacgcaccgtcgcatgcaggaggcgctggtcgctccgaattcggcc
gaggaactgcgtgctgccgagaaggcacgctctccgcgtgacgatacggccggaacgggc
gaagacccgctggccgaggtcgttccgagcggccacggcacggatgccgatgccggcgac
tatctcaccgagtag
DBGET
integrated database retrieval system
