Sphingomonas sediminicola: H9L14_08610
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Entry
H9L14_08610 CDS
T07077
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ssed
Sphingomonas sediminicola
Brite
KEGG Orthology (KO) [BR:
ssed00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssed03032
]
H9L14_08610
03400 DNA repair and recombination proteins [BR:
ssed03400
]
H9L14_08610
Enzymes [BR:
ssed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
H9L14_08610
DNA replication proteins [BR:
ssed03032
]
Prokaryotic type
DNA Topoisomerases
H9L14_08610
DNA repair and recombination proteins [BR:
ssed03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
H9L14_08610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
QNP46975
LinkDB
All DBs
Position
1601172..1602197
Genome browser
AA seq
341 aa
AA seq
DB search
MNGGRLRHSSDSEPGYTRKKQGRYWAYFDEKGKRVTDRDTIDRLNSIALPPAYVDAWFCK
DENGHLQATGTDARGRKQYRYHRAFRARRDKKKYSGTQEFGAALPKIRRKVAADLKTRAL
SRDAVIAAVVRLLDRGHMRVGNEQYARDNKSFGATTLRSRHVKRNGSKLLMRFTGKHGIV
HEVPITDSNLKRIVSKCDDLPGQHLFQYISDDGEPCPITSADVNDYIREASGGDFTAKNF
RTWGASVIAFEQMLTASEHEKARISLKTVLEPVAEALGNTPAISRKSYVHPKLIEAARDR
PRNPLNGLERPRERKWLSSGEVGLLKFLAGRKRSSSPDATA
NT seq
1026 nt
NT seq
+upstream
nt +downstream
nt
atgaacggcggcaggctgaggcacagcagcgacagcgagcccggctacacgcgaaagaag
cagggccgctactgggcctatttcgacgagaaagggaaacgcgtcaccgaccgcgacacg
atcgaccggttgaactcgatcgccttgcctccagcctatgtcgacgcctggttctgcaag
gacgagaacggtcacctgcaggcgaccgggaccgacgcgcgcggccgcaagcaatatcgc
taccaccgggcgtttcgggcccggcgcgacaagaagaagtatagcgggacgcaggagttt
ggagctgctcttcccaagatcagacgaaaggtcgcggccgatctcaagacacgcgccttg
agccgtgatgcagtaatcgcggcggtcgttcgcctgctcgacagagggcatatgcgcgtc
ggcaatgagcaatatgcgcgggacaacaagagcttcggcgcgaccacccttcgttccagg
cacgtgaagcggaacggcagtaagctcctgatgcgcttcaccggcaagcacggaatcgtt
cacgaggtgccgatcacggattcaaacctcaagcggatcgtgtccaagtgcgacgacctg
ccgggtcaacatctgttccagtatatctctgatgatggcgaaccttgtccgatcacctcc
gccgatgtgaacgactatatccgggaagcttcgggcggtgatttcactgccaagaacttc
cgcacctggggcgcgagcgtcatcgccttcgagcagatgctgacggcatccgagcacgag
aaggcgcgcatcagtttgaaaacggtgctcgagccggttgccgaagcgctcggcaacact
cccgcgatcagccgcaagtcctacgtacaccccaagctgatcgaggcggcccgtgacagg
ccgcgcaacccgttgaacggccttgagcgtcctcgcgaacgcaagtggctctcgtctggg
gaagttgggcttctcaaattcctcgcaggccgcaaacgaagctcttcgcctgacgccacg
gcttga
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