Sphingomonas sediminicola: H9L14_13465
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Entry
H9L14_13465 CDS
T07077
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ssed
Sphingomonas sediminicola
Pathway
ssed03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssed00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H9L14_13465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssed03019
]
H9L14_13465
Enzymes [BR:
ssed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
H9L14_13465
Messenger RNA biogenesis [BR:
ssed03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H9L14_13465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Utp25_C
AAA_22
ERCC3_RAD25_C
ssDNA-exonuc_C
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QNP45545
UniProt:
A0ABX6T7B7
LinkDB
All DBs
Position
2500529..2502016
Genome browser
AA seq
495 aa
AA seq
DB search
MSFHNLGLSKPLLDALAAKNYSQATPIQHQAIPTVLTGRDLLGIAQTGTGKTAAFMLPSL
DRLAANRNIPKPGQIRMLVLAPTRELASQIAVSAETYGRFMRLSVGVIFGGVPNSKSVRT
VARGLDVLVATPGRLLDLIDQRALSLRDLEILVLDEADQMLDLGFIHALKRIVALVPAKR
QTLFFSATMPRAIKELADKYLTNPAEVAVTPVAKTADRVDQKVVMVNQPEKTALLTILLQ
TEKVERALVFSRTKHGADKIVRMLNAAGVAASAIHGNKSQGQRERALAEFRSGQTPVLIA
TDIAARGIDIPGVSHVVNYDLPEVPEQYVHRIGRTARAGAEGKAIAFCSSEERGLLRDIE
RLTRQKIEVAPLPENFVQAAAELKRLKPAPKQAEEQPRRFHSHGIKADRRFDGQRREQRN
ERSGERSGQQRSGQQRPEHPAQASNGPIDRSSSVIRTAPMAMPHTVPKAAARSVRSAAGA
VAQAAVKLRASSRRP
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
ttgtcatttcataatcttggcctgtccaagccccttctcgacgcgcttgcggcgaagaat
tattcgcaggcgacgccaatccagcatcaggcgatcccgacggtcctgaccggccgcgat
ctcctcggcattgcacagactggtaccggcaagacggcggcgttcatgctgccgtcgctc
gaccgcctggcagccaatcgcaacattcctaagccgggccagatccggatgctggtgctt
gcgccgacccgcgaactcgcttcgcagatcgcggtgagcgctgagacctatggccgcttc
atgcggctgtctgtcggcgtcatcttcggcggcgttcccaattcgaagagcgtgcgcacg
gtcgcgcgcggtctcgacgtcctcgttgctacgccgggccgcctgctcgacctcatcgac
cagcgcgcgctcagccttcgcgatctcgaaatcctcgtcctcgacgaggccgatcagatg
ctcgacctcggcttcatccatgcgctgaagcgcatcgtcgccttggtcccggcaaagcgc
cagaccttgttcttctcggccaccatgccgagggcaatcaaggagcttgccgacaagtat
ctgacgaacccggccgaggttgcggtgactcccgtcgccaagaccgccgatcgcgtcgat
cagaaggttgtcatggtcaaccagccggaaaagaccgctctcctgaccattctcttgcag
accgaaaaggtcgagcgcgccctggtcttcagccgaaccaagcatggagccgacaagatc
gtccggatgctcaatgccgcaggggtcgcggccagcgccattcacggcaacaagagccag
ggccagcgtgagcgggcgctagccgagttccgttcaggtcagacgccggtcctgattgcg
accgacattgccgcgcgcgggatcgacatcccgggtgtcagccatgtcgtcaattacgac
cttcccgaggtcccggagcaatatgtccaccgtatcggccggaccgctcgcgcgggcgcc
gagggcaaggccattgccttttgttcatcggaggagcgcggactgttgcgcgacatcgag
cggctgacgcgtcagaagatcgaagttgctccgcttccggagaacttcgtccaggcggct
gccgaactgaagcggctcaagcccgctcccaagcaggccgaggaacagccgcggcgtttc
cactcgcacggcatcaaggcggaccgccgcttcgacggccagcgccgcgagcagcgcaac
gagcgttccggtgaacggtcaggccagcagcgttcgggtcagcagcggccggaacatccc
gcgcaggccagcaacggaccgatcgaccgcagcagcagcgtcatccgcaccgcgccgatg
gccatgccgcacaccgtcccgaaggcggccgcccgaagcgtccgttccgcggcgggcgcg
gtcgcccaggcggccgtcaagctcagggctagttcgcgtaggccttga
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