Shewanella seohaensis: N7V09_01325
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Entry
N7V09_01325 CDS
T08778
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
sseh
Shewanella seohaensis
Pathway
sseh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sseh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
N7V09_01325 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sseh03021
]
N7V09_01325 (rpoA)
03400 DNA repair and recombination proteins [BR:
sseh03400
]
N7V09_01325 (rpoA)
Enzymes [BR:
sseh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
N7V09_01325 (rpoA)
Transcription machinery [BR:
sseh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
N7V09_01325 (rpoA)
DNA repair and recombination proteins [BR:
sseh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
N7V09_01325 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
UXM82354
LinkDB
All DBs
Position
complement(282631..283620)
Genome browser
AA seq
329 aa
AA seq
DB search
MQGSVTEFLKPRLVDIEQVNPTRAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSSKEGVQEDILEILLNLKGLAVVIEGKDEAMLTLSKSGAGPVTAADITHDGD
VTIMNPDHVICHLTGNNDISMRIRVERGRGYVPASARAQTEDDDRPIGRLLVDSSFSPVA
RIAYNVEAARVEQRTDLDKLVIDMTTNGTIDPEEAIRRSATILAEQLDAFVELRDVTEPE
MKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLT
EIKDVLASRGLSLGMRLENWPPASLADDL
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgcagggttctgttacagaatttcttaaaccgcgtctcgttgatatcgagcaggttaac
ccaacacgtgccaaggttacactggagccgcttgagcgtggttttggtcatactctaggt
aacgcgttgcgtcgtatcctattgtcgtctatgcccggctgcgcggttaccgaagtcgag
attgatggtgtactgcacgaatacagcagcaaggaaggcgtacaagaggatatcctagaa
atcttgctgaaccttaaaggtttagcagtggttatcgagggtaaagacgaggctatgctt
actttaagcaagtcaggcgcaggccctgttaccgcagcagatatcacgcacgatggtgat
gttactattatgaatcctgatcatgttatctgtcatctgactggtaataatgacattagc
atgcgtatccgtgttgaacgtggtcgtggttatgtgcctgcttctgcacgtgcacagacc
gaagacgatgatcgtccaatcggtcgtttgttagtggattcatctttctcacctgtcgcg
cgtattgcttacaatgttgaagcagcacgtgttgaacagcgtactgacttagacaaactc
gttatcgatatgaccactaacggcactatcgatcctgaggaagcaattcgtcgttctgcg
accatcttagctgaacagctagatgcgtttgttgagcttcgtgatgtcactgagccagaa
atgaaagaagagaaaccagagttcgacccaattctgttgcgtcctgtcgacgatctagag
ctaactgtacgttcggctaactgtttgaaagccgaagcgattcattacatcggagatctg
gtacagcgtactgaggttgagctacttaaaactcctaacttgggtaagaagtctcttacc
gaaattaaggatgtgttggcttctcgcggactttcattaggtatgcgtctagaaaactgg
cctccggctagtttagcagacgacctataa
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