Shewanella seohaensis: N7V09_04335
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Entry
N7V09_04335 CDS
T08778
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sseh
Shewanella seohaensis
Pathway
sseh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sseh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N7V09_04335 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sseh03019
]
N7V09_04335 (recQ)
03400 DNA repair and recombination proteins [BR:
sseh03400
]
N7V09_04335 (recQ)
Enzymes [BR:
sseh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
N7V09_04335 (recQ)
Messenger RNA biogenesis [BR:
sseh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
N7V09_04335 (recQ)
DNA repair and recombination proteins [BR:
sseh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
N7V09_04335 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
UXM82826
LinkDB
All DBs
Position
938820..940643
Genome browser
AA seq
607 aa
AA seq
DB search
METQLLDIHDDPLSHRLAQVFGYRDFRDGQREVIERVCSGEDCLVIMPTGGGKSLCYQLP
ALLMPGITIVVSPLISLMKDQVDSLLQTGVNAAYLNSSQPREQSLEVLRQLHRGELKLLY
VSPERLLTADFIERMRSLPLAMFAIDEAHCISQWGHDFRPEYAALGQLKQLFPHVPMMAL
TATADQATRQNICERLGINPFKLLSSFDRPNIRYTVAEKLNAANQLRQFLLQQNGSSGIV
YCSSRRRVDEVAERLTLQGFHAKAYHAGMTPQERGEVQDSFLKDQIDIVVATVAFGMGIN
KSNVRFVVHYDIPKSIEAYYQETGRAGRDGLEAEAFMLFDPADIGRVRHLIEQSEPGPQQ
QVDFHKLNTMAAFAEAQTCRRQVLLHYFDESALEPCGNCDICLDPPKRYNGTEDAQKVLS
CIYRLGQRFGINHLIEVLRGSKGAAIVDRGHDKLSTWGIGKDKSHEYWLSVIRQLIHLGL
ASQDITRGSSITLNPSARPILKGEVALMLAEPRIQLTNIKRKVTQSRAPLNYDRKLFARL
KALRRTIAEEQDVPPYLVFNDATLAEMAAMMPTSPGEMLAVNGVGERKLSRFGDDFLDEI
AAYLAGE
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atggaaactcagttactcgacatacatgatgatccgctgtcacaccgcctagcgcaggtg
tttggttaccgtgactttagggacggtcagcgcgaggttatcgaacgtgtatgcagtggt
gaggactgccttgtgatcatgcccaccggcggcggtaagagtctgtgttaccagttgccc
gcactgctgatgcctggcatcactatcgtggtatcaccgctgatttcattgatgaaagat
caggtcgacagcctgttgcagacgggggtcaatgccgcctatttaaactcatcgcagccg
cgggaacaaagtttagaggtgcttaggcagttgcatcgaggcgagctaaaactgttgtat
gtgtctcctgagcggttactgacagccgattttatcgagcgcatgcgctccctgccacta
gccatgtttgccattgacgaggcgcactgcatcagtcaatggggacacgattttcgtccc
gaatatgcggcccttggccagttaaagcagttatttccccatgtgcctatgatggcgctc
accgccacagcggatcaggcaacacggcaaaatatttgcgagcgcctagggattaatcct
tttaaattattatcgagtttcgatcgacccaatattcgctatacggttgccgaaaaactc
aatgccgccaatcaattacgacagtttttactgcagcaaaatggcagtagtggcattgtc
tactgcagcagtcgacgccgtgtggatgaggtggcagaaagactcaccctgcaagggttt
catgctaaggcataccatgcgggcatgacgccacaagagcgcggtgaagtgcaggatagc
ttccttaaagatcaaattgatattgtcgttgctactgttgcctttggcatggggattaac
aaatccaacgtgcgctttgtggtgcattacgatatccctaagagcatcgaagcctattac
caagaaaccggccgagcgggccgcgatggactcgaggccgaagcctttatgctgttcgac
cccgccgatattggtcgggtgcgccatcttatcgaacagtctgagcctgggccgcagcag
caggtggatttccataaactcaataccatggctgcatttgctgaggcgcaaacctgtcgc
cgtcaagtgttgctgcattacttcgatgaaagcgcgttagagccctgcggcaactgcgat
atttgtctcgacccacctaaacgttataacggcaccgaggatgcgcagaaggtgctttct
tgcatttatcggctcgggcaacgctttggtatcaatcacttgattgaagtattgcgtggc
tccaagggcgccgcaattgtcgaccgagggcacgataaactcagcacttgggggataggc
aaagacaaaagccatgaatattggttgagtgttattcgtcagctcatccatttggggctg
gcgagccaagatattactcggggctcatccatcaccttaaatccttcggcaagaccgatc
cttaagggcgaggtggcgctaatgttggcagagccgcgcattcaactgacgaacattaag
cgcaaagtcactcagtcgcgggcgccgctgaattacgaccgcaaactgtttgcgaggcta
aaagccctacgtcgcacgattgccgaggagcaggacgtaccgccttatttggtgtttaac
gatgcgaccttagcggaaatggcggccatgatgcctaccagtcccggtgagatgctggcc
gttaacggggtcggtgagcgcaaactcagccgatttggcgacgatttcctcgatgagata
gccgcttatttagcgggggaataa
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