Shewanella seohaensis: N7V09_05215
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Entry
N7V09_05215 CDS
T08778
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sseh
Shewanella seohaensis
Pathway
sseh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sseh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N7V09_05215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sseh03019
]
N7V09_05215
03009 Ribosome biogenesis [BR:
sseh03009
]
N7V09_05215
Enzymes [BR:
sseh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
N7V09_05215
Messenger RNA biogenesis [BR:
sseh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
N7V09_05215
Ribosome biogenesis [BR:
sseh03009
]
Prokaryotic type
rRNA helicases
N7V09_05215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
HD_4
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-ProteinID:
UXM82962
LinkDB
All DBs
Position
complement(1140073..1141941)
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AA seq
622 aa
AA seq
DB search
MSSSEKTFRELGLSEPLLRALDELGYEKPTPIQAASIDPLMAGKDILGQAQTGTGKTGAF
ALPLLNKVTSQAVPQILVLAPTRELAVQVAEAFSSYAKFMKGFHVLPIYGGQSMHQQLNA
LKRGPQVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPEQR
QLALFSATMPEQIKRVANKHLKDATNISIAASHTTVDSIEQRFVQVSQHNKLEALVRVLE
VENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKSGKLDILIA
TDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIE
RATNSRISPMKVPSPETVAERRLSRLGEQLAQTMTQDLDFMREAVAQLCQQLEVDTDLLA
AALLHQVQQERPLQLPAIQERTRDERNERSERGAERGERGERRSRESRPLPASLGSAEAL
KDNPDLKMCRYVIDVGRDNGVGVGNIVGAIANEANIDSRYIGAIQLYDAVTTVDLPDGMP
KEVLQHLKKVRVCGKPLNIREAGDQVFVDSGRGARSDRRPRGDRPMGERKPRSASGDKPF
ADRKPRSDKPAGERRPRKPREE
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccagtgaaaaaactttccgcgaactcggcctgtccgagcctttgttgcgtgct
cttgacgagctaggttacgaaaaacctacgccaattcaagcagctagtatcgacccatta
atggctggtaaagatattttaggccaggcacaaaccggtacaggtaaaactggcgccttc
gccctgcccctgctcaacaaagtgaccagccaagctgttccacaaatcttagtattagcg
ccaacccgcgaattagcggtgcaagtagcagaagctttcagcagctacgcgaaatttatg
aaaggtttccatgtactgccaatctatggcggtcagagcatgcatcagcaattaaacgcc
ctgaagcgtggcccacaggttatcgtgggtacccctggccgtgtaatggaccatatgcgc
cgtggcaccttaaagctggaaaccctgcaagcgctggtactcgacgaagccgacgaaatg
ttaaaaatgggctttatcgacgatatcgaatggattctggaacacacaccagagcagcgc
caactggcactgttctcggccactatgccagaacaaatcaagcgtgttgctaacaagcac
ttaaaagatgcgactaacatcagcatcgctgcgagccacaccacagttgactctatcgag
caacgtttcgtgcaagtgtctcagcacaacaagttagaagccttagtacgcgtattagaa
gttgaaaataccgaaggtatcatcatcttcgttcgtacccgtaactcatgcgttgaatta
gcagaaaaactcgaagcccgcggctacgcttcatcaccactgcacggtgatatgaaccag
caagcccgtgagcgcgccgttgagcagctgaaaagcggcaagctagacattctgatcgcg
accgacgttgcggcccgtggtctggacgttgagcgtatcggccacgtagtgaactacgat
atcccttacgatactgaagcttacgtacaccgtatcggtcgtactggccgtgctggccgt
acgggtatggcgattctgttcgttaccagccgtgaaatgcgtatgctgcgcaccatcgag
cgcgcaaccaacagccgtatttcaccaatgaaagtaccaagcccagagacggttgcagaa
cgtcgtctgtctcgcttaggtgagcagttagcgcaaaccatgacgcaagatctggacttt
atgcgcgaagcagttgcccagttatgccaacagttggaagtggataccgatctgctggcc
gcagccctgctgcaccaagttcagcaagaacgcccactgcaattacctgcgattcaagag
cgtacccgcgatgaacgcaatgagcgcagcgaacgtggtgctgaacgtggcgagcgcggt
gaacgtcgcagccgtgagtcacgcccactgccagccagccttggcagcgccgaagcgtta
aaagacaacccagatctgaagatgtgccgttatgttatcgacgtaggtcgtgacaatggc
gtgggtgtgggcaacatcgttggcgctattgcaaacgaagctaacatcgacagccgttac
atcggtgccatccaattatacgatgcagtgactaccgttgacctgccagacggcatgcca
aaagaagtgctgcagcacctgaagaaagtgcgcgtatgtggcaagccactgaacatccgt
gaagcaggcgatcaggtattcgtagattcaggccgtggcgcacgtagcgaccgtcgtcca
cgtggtgaccgtccaatgggcgagcgtaaaccacgttcagcctctggcgacaagccattt
gctgatcgcaaaccacgctctgataagccagcaggcgagcgtagaccacgtaaaccacgc
gaagagtaa
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