Shewanella seohaensis: N7V09_08330
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Entry
N7V09_08330 CDS
T08778
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sseh
Shewanella seohaensis
Pathway
sseh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sseh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N7V09_08330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sseh03019
]
N7V09_08330
Enzymes [BR:
sseh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
N7V09_08330
Messenger RNA biogenesis [BR:
sseh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
N7V09_08330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
UvrD-helicase
AAA_19
UTP25_NTPase-like
AAA_22
AroM
SecA_DEAD
Gag_p24
Motif
Other DBs
NCBI-ProteinID:
UXM83485
LinkDB
All DBs
Position
complement(1852328..1853629)
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AA seq
433 aa
AA seq
DB search
MRFESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPIL
QKMAENPSETLKSNARVLILTPTRELAAQVADNVEAYSKYLNFSVLTIYGGVKVETQAQK
LKRGADIIVATPGRLLEHLTACNLSLSSIDFLVLDEADRMLDMGFNADIQKILQAVNKKR
QNLLFSATFSSAVKKLANDMMVKPQVISADKQNTTADTVSQVVYPVEQRRKRELLSELIG
KKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFMSGKVRVLVA
TEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLADIE
KLIGQKIRRITVPGYEVGSRDLLLKQLQTRRSFAKKQQRLDNVSEQIIAEKSMQGRRVKM
KVGQAPSKAKKLK
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgagatttgaatcttttagtttttgccccgagattttacgcgctatctcagattgcggt
tatcaaaaaatgacacctattcagcagcaagcgatccccgccatccgccgcgggcaagat
gtgctcgccagcgcgcaaacgggcacaggtaaaacggcggcattcgcattacctattctg
caaaagatggcagaaaatcccagcgagaccttaaaatcgaacgcgcgggtattaatctta
acgccgactcgcgagctcgcagctcaagtcgccgacaatgttgaagcctacagcaagtat
ttaaatttcagcgtgttaaccatttacggcggtgtaaaggttgagactcaggcgcaaaaa
cttaaacgcggtgccgatattattgtcgcaacgccgggccgtttgctcgagcaccttacc
gcctgtaatttaagcctctctagcatcgactttttagtgctcgatgaagccgaccgtatg
ttagacatgggctttaatgcggatattcaaaaaatcctccaagcggtgaataagaagcgt
caaaacctattgttctcggccactttctcgagcgcagtaaaaaaactggccaacgacatg
atggtcaagcctcaagtcatcagcgccgacaagcaaaacaccaccgctgataccgtgagc
caagtggtgtatccggttgagcagcgccgtaagcgcgaactcttatccgaactgattggt
aagaagaactggcaacaagtgttagtctttaccgcgacgcgcgatgcggccgacacctta
gtgaaagaattgaatttagacggcattccctctgaagtcgtccacggtgaaaaggcgcaa
ggtagccgtcgccgcgcactgcgtgagtttatgtcgggtaaggtacgcgtcttagtcgcc
accgaagtcgccgcccgtggcttagatatcccaagccttgagtatgtggtcaacttcgac
ttacccttcctcgccgaagactatgtgcaccgtattggccgcaccggccgcgcgggtaaa
tctggggtcgcaatttcatttgtgagccgtgaagaagagcgcaccttagcggatattgaa
aagcttatcggccaaaaaattcgtcgtattaccgttcccggatacgaagttggtagccgc
gacttgctgttaaagcagctacaaacccgccgcagttttgccaagaaacaacagcgactc
gacaacgtgagcgagcagatcattgccgaaaaaagcatgcagggccgccgcgtaaaaatg
aaagttggccaagccccaagcaaggcaaaaaagctgaaataa
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