Shewanella seohaensis: N7V09_11760
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Entry
N7V09_11760 CDS
T08778
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sseh
Shewanella seohaensis
Pathway
sseh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sseh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
N7V09_11760 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sseh03400
]
N7V09_11760 (mfd)
Enzymes [BR:
sseh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
N7V09_11760 (mfd)
DNA repair and recombination proteins [BR:
sseh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
N7V09_11760 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
AAA_30
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UXM83916
LinkDB
All DBs
Position
complement(2625836..2629318)
Genome browser
AA seq
1160 aa
AA seq
DB search
MTQISALTPPVVKNGTQMQTLSCLAGVGQAVTLASLVRQHKGTTLIVTSDTPTALSIELE
LNYLLAKSAIKVRLFPDRETLPYDSFSPHQDLISQRLETLSQITQAEHSVVIVPVTTLMM
RLPPKSYLSSNVFVLKKGDKYQLHDVRQQLTDTGYHLVEQVYEHGEFAIRGSILDIFPTG
VNMPLRIELFDDEVETIRHFDPETQRSSTPVDAVRLLPAKEFPTDSSAIEGFRQRYRRRF
EVIVKEPESVYQLVSRNLMPAGIENYLPLFFDEVATLFDYLPKDTQLVTLGDIEKSARAH
LQEVETRYEDRRVDPLRPLLAPKELYLLIEELFAAFKPLPRYQFIAPQPDAVAGAVQIDA
SVLPEVSANHKLKQPLIALQDYAERTPRMLFSAESEGRREALLELLGKIQLKPALFGHFD
EFIQSDAKLGLIVSPLSRGCLLGLGKQTAVSIICETELFGHRISQQRRREKQRQISNDTL
IKNLAELKVGQPIVHLEHGVALYQGLVTLDTGGLVAEYLQLEYSGGDKLYVPVSNLHMIS
RYSVGADGEAHLNKLGNDTWAKAKNKAIEKIRDVAAELLDVYARRQARPGESCDINDEEY
AQFAQGFPFEETVDQESAIHAVLADMQSPVAMDRLVCGDVGFGKTEVAMRAAFVAVNAGK
QVVVLVPTTLLAQQHYENFKDRFADWPVVIEVMSRFRTAKEQTQVLKLLEEGKVDIVIGT
HKLLQSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGM
RDLSIIATPPAKRLAVKTFVRESDPATVREAILREILRGGQVYYLHNNVETIEKCAQDIS
TLLPEARVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERADT
FGLAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTSDARKRLEAIDALEDLGAGFMLATQDL
EIRGAGELLGDEQSGHISKIGFSLYMEMLESAVKALKQGKEPSLAQMLNQQCEMELRIPA
LLPEDYVGDVNIRLSLYKRIASCDSEEALDELKVELIDRFGLLPEATKNLMEMTLYKHQA
TRLGATKIEVHAKGGSIEFSDDHVIDPGFIIGLLQSQPQIYRMDGPNKLKFILNAETAKD
RLALVKLLLEQLSQHRLGDK
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgacacaaatttcagccttaacaccgcccgttgtcaaaaatggaactcaaatgcaaacc
ctgtcgtgtctcgccggggttggtcaagccgttaccctcgccagcctagttcgccaacac
aagggcacaacactgattgtgaccagtgatacgccgacggcattgagtatcgagttagag
ctcaactatttgttggctaaaagtgcgattaaggtgcgactgttccctgaccgtgaaact
ctgccctacgacagtttttcgccccatcaggatttgatttcccagcgtttagaaaccctg
tcgcaaatcacccaagccgagcacagcgtagtgatagtgccagtgacaacgctgatgatg
cgcctaccgccaaaatcctatttaagctccaatgtgtttgtgcttaaaaaaggcgataaa
tatcagctccatgatgtgcgccaacagttaaccgacacgggttatcacttggtcgaacag
gtttacgaacatggcgagtttgctattcgtggctcgattcttgatatcttccccaccggc
gtgaatatgccgctgcgtatcgaactgttcgatgatgaagtcgagaccattcgtcatttc
gatcctgaaacccaacgctcatccactccagtcgatgcggttcgcctgttacccgccaag
gaattccctaccgacagcagcgccatcgaaggttttaggcagcgttatcgccgacgcttt
gaggtcatagtcaaggagcctgaatcagtttatcaactggtgagccgcaatttgatgccc
gcaggcattgagaactatctgccactgtttttcgatgaggtcgcgacgctgttcgattat
ctgccgaaggacactcagttagttaccctaggcgatatcgaaaagtccgcccgtgcgcat
ttgcaagaggtggaaacccgttatgaagacagacgagtcgacccattgcggccgctgttg
gcacccaaagagctgtatttactgatagaagaattatttgccgcctttaagccgctgcct
cgctatcagtttattgcgccgcaacccgatgccgtcgctggcgcagtacagattgatgcc
agtgtgttgcccgaggtaagcgctaatcacaagttaaagcagccactgattgcgctgcaa
gattacgccgagcgtacgccgcggatgttgtttagtgccgaatcggaaggccgccgcgaa
gctttgctcgagctcttaggtaaaatccagttaaaaccggcgttattcggccattttgat
gagtttattcaaagtgatgccaaactgggtttaatcgtatctcccctctcccgtggttgt
ttactcgggctaggaaagcaaaccgccgtcagcatcatctgcgaaaccgaactctttggt
catcgcatttcccagcagcgccggcgcgaaaaacaacgccagatcagcaacgataccctg
atcaaaaacttagccgagctcaaagtcggccagccaattgtgcacttagagcacggtgtg
gcgctgtatcaaggcttagtcaccttagataccggcggattagtggccgaatacctacag
ctggaatactcgggcggcgataaactctatgtgcccgtgtctaacctgcacatgatcagc
cgctacagcgtcggcgccgatggcgaggctcacctcaataaactcggtaacgacacttgg
gccaaggcaaaaaacaaagcgattgagaaaatccgcgatgtggctgccgagctgctcgat
gtctacgctcgccgtcaagcacgtcccggcgaaagctgcgacatcaacgatgaagagtat
gcgcaatttgcccaaggtttcccctttgaagaaaccgtcgatcaggaaagcgcaattcat
gccgtacttgccgatatgcaatcccccgtcgccatggaccgcctcgtctgcggtgacgtg
ggctttggtaagactgaagtcgcgatgcgcgccgcctttgtggcggtgaatgcgggtaaa
caggtagttgtgctagtgcccaccacgctactcgcccagcagcactacgaaaactttaag
gacagatttgccgactggcccgtcgtaattgaggtgatgtcccgctttagaaccgccaaa
gagcagacccaagtgctgaaactactcgaagaaggcaaagtcgatatcgtcattggcacc
cataagctgctgcaatccgaggcaaaatttgaaaacttaggcctgcttatcatcgatgaa
gaacacagattcggcgtaagacaaaaagagaaaatcaaggcgctacgtgccaacgtggat
attttgaccctcaccgccactccgatcccccgcaccttaaacatggcgatgtcggggatg
cgcgatttatcgattattgcgactcctcccgctaagcgcttggcggtgaagacctttgtg
cgcgaatccgatcccgccaccgtgcgtgaggccatactgcgtgaaattctccgtggtggc
caagtgtattatttgcacaacaatgtcgaaaccattgagaaatgcgcccaagatattagt
accctgctacccgaagcgcgggtggtggtggcccatggtcaaatgcgtgagcgggatctt
gagcgggtgatgtcggacttttatcaccaaagattcaacgtgttagtctgtaccactatt
atcgaaaccggtatcgacgtcccgagtgcgaatacgattattatcgaacgcgccgacacc
tttggtttagcccagttacatcagctgcgtggccgtgtcggccgctctcaccatcaagcc
tatgcgtatttgatgacgccgcatcctaaacgcatgaccagtgatgcccgcaaacgcctc
gaagccatcgatgccctcgaggatttaggcgcaggctttatgctcgcaactcaagactta
gagatccgcggcgcgggtgagctattgggcgatgagcaaagcggccatatttctaaaatc
ggctttagtctctacatggaaatgttggaatcggcggtcaaggcgctcaaacagggtaaa
gagccatcgctggcgcaaatgctcaatcagcaatgcgagatggagctaagaattcctgcg
ctattgccggaagactatgtcggtgatgtgaatattcgtctgtcactctataagcgcatc
gccagttgtgacagtgaagaagccttagatgaactcaaggttgagcttatcgaccgcttc
ggtctgctgcccgaggccaccaaaaacctgatggaaatgactttatataaacatcaggca
actcggctgggcgcgactaaaattgaggtacatgccaagggcggcagcatcgaatttagt
gatgatcatgtgattgatcccggctttatcatcggattactgcaaagtcagccacaaatc
tatcgaatggatgggccgaataagttaaagttcatcctcaatgccgaaacggcaaaagat
aggctcgctttggtcaaactcttgctcgaacaactatcgcaacatcgtcttggagataaa
tag
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