Shewanella seohaensis: N7V09_16250
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Entry
N7V09_16250 CDS
T08778
Name
(GenBank) helix-turn-helix domain-containing protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
sseh
Shewanella seohaensis
Pathway
sseh03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sseh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
N7V09_16250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sseh03000
]
N7V09_16250
03400 DNA repair and recombination proteins [BR:
sseh03400
]
N7V09_16250
Enzymes [BR:
sseh01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
N7V09_16250
Transcription factors [BR:
sseh03000
]
Prokaryotic type
Helix-turn-helix
AraC family
N7V09_16250
DNA repair and recombination proteins [BR:
sseh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
N7V09_16250
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
HTH_3
DUF6233
HTH_31
Motif
Other DBs
NCBI-ProteinID:
UXM81325
LinkDB
All DBs
Position
complement(3639756..3641384)
Genome browser
AA seq
542 aa
AA seq
DB search
MKQTSVSQNSAPKPPFEQASSDSQGCQISAGICREARMSRDPRFDGKFFVGVLSTGIYCR
TVCPAVAPKEENVRYFDSAIKAAQAGLRPCLRCRPDSAPGSNPWKGTNTTLDRAIGLIEA
GALSGEQGLTVEALADKLGISSRYLNKLFTAGFGTSPKQFALYRQLLFAKQLLHQTQLPI
TQVALAAGFNSIRRFNEAFQQALQLTPTQLRKSSQKSTTKIDDGESAELVCSQEMPAHSL
SLYQYYRPPLDWSAQLAFYRLRAVAGMEWFSDTEDSHAHGAIDPNTPLEYGRTLQLEDIR
AVVHIVHEAPLHRFKITLTLTPDSPLSGLQKLITQVRRILDLDADMQQIEHNLEHLTDLK
LSSKSGLRIPGAGSVFEAGCRAVLGQQVSVVQATKLLNILVEAYGERFSLNGREYRLFPT
PQAIREASLDELKMPGARKLALNALAAFICEQPEASVDAWIGVKGIGPWTIAYAKLRGLG
DPNIFLHTDLIVKKQLLASVAAQKGVDIEAVKQLDYTTLAQQVSADIAPWGSYLTFQLWS
NA
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atgaagcagacaagcgtgagccaaaattcagccccaaaaccgccattcgagcaggcatcg
agcgactcgcagggttgccaaatatccgccgggatttgccgcgaagcgcgcatgagccgc
gatccacgttttgacggtaagttctttgtgggcgtgttaagtacggggatttattgccga
acagtgtgccccgcagtagcgccgaaggaagaaaatgttcgttattttgactcggccatt
aaagctgcgcaggcgggactaagaccctgtctgcgttgccgcccagacagtgcccctggc
tctaatccgtggaaaggtactaacacaaccctggatagagcgataggtttgattgaagct
ggcgccttatctggcgagcaaggattaacggtggaggccttggcagacaaactggggatc
agcagccgttatttaaataagttatttaccgcaggatttggcacttcacctaaacaattt
gccctctatcgtcagttattgttcgcaaaacagttattgcatcaaacgcagttgcccatc
acacaggtcgcccttgccgcaggctttaacagtattcgccgtttcaatgaggcatttcag
caggcgctgcaattaacgcctacacagttacgaaaatccagccagaaatcgacgacgaaa
atagacgacggggagagtgccgaactcgtttgttcgcaggagatgccagcgcacagcttg
agtctgtatcagtactaccggccaccactcgattggtcggcgcaattagctttttatcgc
ctgcgcgccgtcgctggcatggaatggtttagtgacacagaagactctcacgcccatggg
gcgattgacccaaatacgccacttgagtatggccgcactctgcaacttgaggatattcgc
gctgtggtgcatatcgtccatgaggcgcctctgcatcgctttaaaatcacgctgacgtta
acgcctgactcgcccttatcgggcctacaaaagctcatcacccaagtgcgacgcatttta
gatctcgatgccgacatgcagcagattgaacacaatctagagcacttgaccgatcttaaa
ctcagtagcaaatccgggcttaggatcccgggcgcaggctcggtgtttgaggcgggttgt
cgagcagtcttaggccagcaggtgagcgtagtgcaggccactaaattactgaatatattg
gtcgaagcctatggcgagcgctttagtttaaacgggcgcgaatatcgcctgttccccacg
ccgcaggcgattcgtgaggcgagtctcgatgagcttaaaatgcccggcgcacgcaaactg
gcgctcaatgcgcttgcggcgtttatctgtgagcagcccgaagcctcagtcgatgcgtgg
attggggtaaaaggcatcggcccttggaccattgcctatgccaaactgcgtggacttggc
gatccgaatatcttcttgcacacggatttaattgttaaaaaacaattattagccagtgtt
gccgcgcaaaaaggcgtggatattgaagcggtaaaacagctggattatacaacgcttgca
cagcaggtgagtgcggatatcgccccttgggggagttatttaacctttcagctgtggtcc
aatgcataa
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