Sulfurimonas sediminis: FJR45_01910
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Entry
FJR45_01910 CDS
T07337
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ssei
Sulfurimonas sediminis
Pathway
ssei03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ssei00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FJR45_01910 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssei03021
]
FJR45_01910 (rpoB)
03400 DNA repair and recombination proteins [BR:
ssei03400
]
FJR45_01910 (rpoB)
Enzymes [BR:
ssei01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FJR45_01910 (rpoB)
Transcription machinery [BR:
ssei03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FJR45_01910 (rpoB)
DNA repair and recombination proteins [BR:
ssei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FJR45_01910 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RnfC_N
INO80F
Motif
Other DBs
NCBI-ProteinID:
QOP42769
UniProt:
A0A7M1AZ41
LinkDB
All DBs
Position
329051..333196
Genome browser
AA seq
1381 aa
AA seq
DB search
MLNTLYSGNRLRIDFSKTPQEIEVPNLLQLQQSSYDTFLMLNEKDRATSGIEKVFQSVFP
IHDAQNRLTVEYIGSEVTNPKYTVRECMERGLTYAVSLRMKTRLILWDRDENTKEKLGVK
DIKEQSIFVRDIPLMTDRTSFIINGVERVVVNQLHRSPGVIFKEEESTTAGNKLIYTGQI
IPDRGSWLYFEYDPKDILYMRINKRRKVPVTIMFRALGYSKQDILKLFYPIQTIKINDNT
FSMDFNPKDYATRISYDLVDMNDKVLVAAGKRLSSKKVQKLLDDGVKEVQYPLEILLDRY
LAEPIIDPETGEVLFDAMTHIDETKLKKMAEIGVTEFKIANDIAEGVDSSIINAFNADTD
SLKLLKQTEDIEDENDLAAIRIYKVMRPGEPVTKEAAKIFVNQLFFDPERYDLTQVGRMK
MNHKLGMNIPEYVTVLTHEDIIESVKYVIKVKNGQGHLDDRDHLGNRRIRSIGELLGNEL
HNGLVKMQKAIRDKLSTMSGPMNELMPHDLINSKMITSTIMEFFSGGQLSQFMDQTNPLS
EVTHKRRLSALGEGGLVKERAGFEVRDVHPTHYGRICPVETPEGQNIGLINTLAMYAKVN
EHGFIEAPYKVMKDGKVTHEIVYLTATQEEGKKIAAASNKLDENGQFVEDLIAVRQDGEI
LLRDPKECEYADLSSQMVVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLRANAPMVGT
GVEKLVARDAWECVKAKRAGKIEKVDGKHIYVMGEEDGEIFIDYYPLQKNLRTNQNTSFT
QKPIVKVGERVEKNQIIADGPNMDKGELALGVNAMVAFMPWNGYNFEDAIVISERLIRQD
AFTSVHIYEKEVEARELKHGVEEITRDIPNVRDDELAHLDESGIVKIGTNVKGGMILVGK
VSPKGEVKPTPEERLLRAIFGEKAGHVVNKSLYCPPSMEGVVVDIKVFTKKGYDKDPRAL
ELEKEERDYLEREHYDRLIMIDKEEMLRVTKLLTREPLQSDIKIGDTEYKAGEKINGDDL
KEVNRFAMNAIVKSFSQEIQDEYNKTKSHFQKQKRVFRDEHEEKLTILEKDDILPNGVVK
YVKIYIATKRHLKVGDKMAGRHGNKGIVSIIVPEVDMPYMEDGRSVDVCLNPLGVPSRMN
IGQILEMHLGMAGRELGDQIQAEFDSKQKDYIQNLRTKMIEIADVAGMMKASEVIGNMSD
EEFLIHARDWAKGVKFAAPIFEGTNAQEFEKLYKLANMDADGKRVLYDGKTGEKMKERVN
VGYMYILKLHHLVDEKIHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGASAV
LKEMLTIKSDDVDGRVRAYKALTKGELVPESGIPETLFVLTKELQALALDVDIMDEVEDD
E
NT seq
4146 nt
NT seq
+upstream
nt +downstream
nt
atgttaaacactttatattccggaaaccgtcttcgtatagacttctctaaaactcctcaa
gaaattgaagtaccaaatttactccaactgcaacaaagctcatatgacacatttttaatg
ttaaatgaaaaagacagagcaacaagcggtattgaaaaagtttttcaatctgtttttcct
atccatgatgcacaaaacagattaactgtcgaatatatcggctctgaagtcacgaaccca
aaatataccgttcgtgaatgtatggaaagaggacttacctatgcagtaagcctaagaatg
aaaacacgccttattttgtgggacagagatgaaaacacaaaagaaaaacttggtgtaaaa
gatataaaagagcagagtatatttgttcgtgatattccccttatgaccgacagaacttct
tttattatcaacggcgtggaacgcgttgttgtcaaccagttacaccgatcgccgggtgtt
atctttaaagaagaagagtcgactacggcaggaaacaaattaatttataccggacagatt
attcctgaccgtggttcatggctctattttgagtatgatcctaaagatattctctatatg
agaatcaataaacgtcgtaaagtacctgtaacaattatgtttcgtgctttgggatattcc
aaacaggatattttaaaactcttttacccgattcagacaataaaaatcaatgacaatact
ttttctatggattttaatcctaaagattatgcaacacgtatctcttatgatttggttgat
atgaacgataaggttcttgtagctgcagggaaaagactttcaagcaaaaaagtacaaaaa
cttttagatgatggcgtgaaagaagttcagtatcctttggaaatactcctggacagatat
ttggctgagcctatcattgacccggaaaccggggaagttttatttgatgcaatgacgcat
atagatgaaacaaaattaaagaaaatggctgaaatcggtgtaacagaattcaaaatcgcc
aatgatatcgccgaaggtgttgacagttctatcatcaacgcattcaatgcggatacagat
tctctgaagctgctgaaacagacagaagatattgaagatgagaatgatttggctgcgatt
cgtatctacaaagtaatgcgtccgggcgagcctgtaactaaagaggctgcaaaaatattt
gtcaaccagctcttctttgatcctgagagatatgatctgactcaggttggtcgtatgaaa
atgaatcataagttaggaatgaatattcctgagtatgtgactgttttgacacatgaagat
attatagagtctgtaaaatatgtaattaaagtgaaaaacgggcagggtcacctggatgat
agagatcacttgggtaaccgtcgtattcgttctatcggtgagcttttaggaaatgaattg
cacaacgggcttgtaaaaatgcaaaaagcaattcgtgacaagctctctacgatgagcgga
ccgatgaatgagcttatgcctcatgatttgattaactcaaaaatgattacctctacaatt
atggaattcttttcaggcggtcagctttctcagtttatggatcagacgaatccactctct
gaagtgacacacaaacgtcgtctttcggctcttggtgaaggcggtcttgttaaagagcgt
gccggttttgaagtgcgtgatgttcacccgacacattatggtagaatctgtcctgttgaa
acaccggagggacaaaatatcggtcttatcaatacacttgcaatgtatgcaaaagtaaac
gagcatggatttattgaagctccttacaaagtgatgaaagacggaaaagtgacccatgaa
attgtctatctgactgcaacacaggaagagggcaaaaaaattgccgctgcttctaacaaa
ctggatgaaaacggtcagtttgttgaagacctgattgcagtaagacaagatggtgaaatc
cttttacgtgatcctaaagagtgtgagtatgctgacctctcttctcagatggttgtcggt
gtagccgcttcactgattccgttcttggaacatgatgatgccaaccgtgcgctaatggga
tcaaacatgcaacgtcaggcagtacctcttttacgtgcaaatgctcctatggttggaaca
ggtgttgagaaactggtcgcccgtgatgcatgggaatgtgtaaaagcaaaacgtgctggt
aaaattgaaaaagttgacgggaaacacatttatgtgatgggtgaagaagacggtgaaatc
tttattgattactatccgttacaaaaaaatcttcgtaccaaccaaaatacctcttttact
caaaaaccgattgtaaaagttggtgaaagagttgagaaaaaccagatcatagctgatggt
ccaaacatggacaaaggggaactggcacttggtgtcaatgctatggttgctttcatgcca
tggaacgggtataactttgaggatgccattgtcatctcagagcgtttgattcgtcaagat
gcttttacttcagtgcatatttatgaaaaagaggtagaagcccgtgaactcaaacacggt
gtagaagagattacccgtgatattccgaatgttcgtgatgacgaactggcacatttagat
gaatcgggtattgtcaaaatcggtacaaatgtcaaaggcggcatgattcttgtcggaaaa
gtttctccaaaaggggaagtaaaaccaacaccggaagagcgtcttttacgtgcaatattc
ggtgaaaaagccggtcatgttgtcaataaatcactctactgtccaccgtcaatggaaggg
gtggttgtagatattaaagtatttacaaaaaaagggtatgacaaagatcctcgtgcatta
gaactagagaaagaggagagagactatcttgaacgtgagcattatgacaggcttattatg
atagataaagaagagatgcttcgtgtgacaaaacttctcacccgtgaacctttacagagt
gacatcaaaataggtgatactgagtataaggccggagagaaaatcaacggagatgattta
aaagaagtaaaccgttttgcgatgaatgcaatcgtcaaatctttttcacaggagattcag
gatgagtacaacaaaacgaaaagtcatttccaaaagcaaaaaagagttttcagagatgag
catgaagagaaactcactatcttggaaaaagacgacattttaccaaacggtgttgtgaag
tatgtaaaaatctatatagctacaaaacgtcatctcaaagtcggtgacaagatggccgga
cgtcacggaaacaaaggtattgtctctattatagttcctgaggtagatatgccgtatatg
gaagacgggcgttctgttgatgtttgtctgaatccgcttggtgtaccttctcgtatgaat
atcggtcagattttggaaatgcaccttggtatggcaggccgtgagcttggtgaccagata
caggcagagtttgactcaaaacaaaaagactatatacaaaatcttcgtacaaaaatgatt
gagatagctgatgttgcaggaatgatgaaagcttctgaagttatcggaaatatgagtgat
gaagagttcctgatccatgcaagagactgggccaagggtgttaaatttgctgcacctatt
tttgaaggtacaaatgcccaagagtttgaaaaactctacaaactggcaaatatggatgct
gacggtaaacgtgtactttatgacggaaaaaccggtgagaagatgaaagaacgtgtcaat
gtaggttacatgtacatcttaaaactgcaccacctggtggatgaaaaaattcatgcccgt
tcaaccggaccatactcgcttgttacacaacaaccagtcggtggtaaagcactctttggt
ggtcaaagattcggtgagatggaagtctgggcgcttgaagcgtacggcgcatcggcagtg
cttaaagagatgttgactatcaaatcagatgatgttgatggtcgtgtacgtgcttacaaa
gcacttacaaaaggtgaattggtgccagaatctggtattcctgaaacactatttgtatta
acaaaagagctgcaggcattggctcttgatgtagatattatggacgaggtagaagacgat
gagtaa
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