Sulfurimonas sediminis: FJR45_01915
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Entry
FJR45_01915 CDS
T07337
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ssei
Sulfurimonas sediminis
Pathway
ssei03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ssei00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FJR45_01915 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssei03021
]
FJR45_01915 (rpoC)
03400 DNA repair and recombination proteins [BR:
ssei03400
]
FJR45_01915 (rpoC)
Enzymes [BR:
ssei01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FJR45_01915 (rpoC)
Transcription machinery [BR:
ssei03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FJR45_01915 (rpoC)
DNA repair and recombination proteins [BR:
ssei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FJR45_01915 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
DUF6675
Motif
Other DBs
NCBI-ProteinID:
QOP42770
UniProt:
A0A7M1AZA0
LinkDB
All DBs
Position
333189..337709
Genome browser
AA seq
1506 aa
AA seq
DB search
MSKLVPVEVTEDSRPKDIKQLQFRLASPEKVMSWSHGEVKKPETINYRTLKPERDGLFCA
KIFGPVRDYECLCGKYKKMRYKGVVCEKCGVEVTSTKVRRTRMGHIELVTPVAHIWYVSS
LPSRIGTLLGIKMKDLERVLYYEAYIVEEGGESYYDAEAKTPVLKYDVLNEEQYRTLVQR
FGELGFKARMGGEVIRDLLDSIDLVDLFTNLKEAIGETKSEAKKKTINKRLKVIESFLNS
GNNPAWMMLTVLPVLPPDLRPLVSLDGGKFAVSDVNDLYRRVINRNQRLKRLVELEAPEI
IVRNEKRMLQESVDALFDNGRRANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFS
GRSVIVVGPSLRMDECGLPKKMALELFKPHLIAKLEDKGYATTVKAAKKMIEEKTNEVWE
CLAEIVDGYPIMLNRAPTLHKLSIQAFHPKLIDGKAIQLHPLVCAAFNADFDGDQMAVHV
PLSSAAIAECKVLMLASMNILLPASGKAIATPSQDMVLGIYYLSLEKNGVKGSNKLFANV
DEIRIALEHDALDLHAKVRTRVDGRIIHTTAGRLLIKAILPDFVPAELWNKVMKKKAINE
IVDYVQKHGGIGITASFLDRLKDLGFKHATEAGVSISADDIRVPDMKPAKIAESKARVIE
IQKQFEAGLLTEQERYNKIIDVWTDTNNTLAAEMMQLVQTDKDGFNSIHMMADSGARGSA
AQIRQLAGMRGLMAKPSGEIIETPIISNFKEGLNVIEYFISTHGARKGLADTALKTANAG
YLTRKLVDVAQNVKIVEHDCHTHEGIEISDISDQNTLIESLEDRLNGRVLADDVIDPISN
EILYAEGTLLDEVSAKVIAESGIKTAVIRTPTTCKSEEGVCALCYGVNLATGYIVRPGEA
IGIIAAQSIGEPGTQLTLRTFHVGGTASSTAQERQVIAEKEGFIRYYNLKTYKNKEGKNI
VANRRNAGVLLVEPKIKAPFAGTVEIQTIHDEVIISVKSEDETVRYSLRKLEIAKPNELA
GVSGQIEGKYYFPHKNGVKVEALDSIVETIKDGWNVPSRIPYASELLVDDGAPVTKKILA
KEEGTVKYFLLKGDYLERFEGLKSGYEVVEKGLFAAVIDTNNREAIRHYIARGSVIVTDD
NEGVDRDTVIAKPSSDESVVIAEWDPYSNPIISEANGVVKYEDIIVGTTASEQLDELTGK
TRLMINDHISSEYKPAIVLATEDGELLRYAIEPKSSVYVADGAEVKVADILAKTPKALQK
SSDITGGLPRVSELFEGRRPKATALISEIDGVVSFGKPLRGKVRIIVSNADNGIVKEYFV
DKSHEPVVNPGDFVHAGERLTTGILSSHELLRIMGVKALYNYLVSEVQQVYRSQGVNIAD
KHIEVIFTQMLRQVKIVKSGDTKFIEGDLVSKVKFTQENEKIMRLGGRPAIAEPFLVGIT
RAAVSADSIISAASFQDTTKVLTEAAVSAKVDNLENLKENVIIGRTIPVGTGIYKDQNIE
FEIEEE
NT seq
4521 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaattagtaccggtagaagtaacagaagacagcagaccaaaagatataaaacag
ctccaattccgtttggcatcccctgaaaaggtaatgtcatggagtcacggagaagttaaa
aagccagaaactattaattatcgtactttaaaacctgagcgtgacggtttgttctgtgca
aaaatctttggacctgtaagggactatgagtgtctttgcggcaagtacaaaaagatgcgc
tataaaggtgtggtgtgtgaaaaatgtggtgttgaagtaacatctacaaaagtgcgtcgt
acacgtatgggacacattgaattggtgactccggttgcacatatatggtatgtaagctca
ctgccttcgcgtatcggtacactgcttggaatcaaaatgaaagatttggagcgtgtactc
tattatgaagcgtatatcgtagaagagggtggagagtcttattatgatgcagaggccaaa
actccggttttaaaatatgatgttttaaatgaagagcagtaccgtacacttgtacagaga
tttggtgagcttggtttcaaggcccgtatgggtggtgaagttattcgtgatttgttggat
tctattgatttggttgacctttttaccaacttaaaagaagcgattggcgaaacaaaatct
gaggcaaagaaaaaaacgattaacaaacgtctgaaagttattgagtcatttttaaattca
ggcaacaatcctgcctggatgatgctgactgtactgccggttcttccaccggatttacgt
ccgttagtatcacttgacggcggtaagtttgctgtatctgatgtaaatgatttatatcgt
cgtgttattaaccgtaatcagcgtttaaaacgtcttgtagaacttgaagcacctgaaatt
attgtcagaaacgaaaagcgtatgttgcaggagtctgtagatgcactttttgacaatggt
cgccgtgcaaacgcggtaaaaggcgcaaacaagcgtcctttgaaatctttaagtgaaatc
attaaaggaaagcaggggcgttttagacaaaacctgcttggtaaacgtgttgacttttcc
ggacgttctgtcattgtagtcggaccgtctttgcgaatggatgaatgtggtttgcctaaa
aaaatggcacttgaactctttaagccgcatttgattgcaaaacttgaagacaaaggctat
gcaacaacggtaaaagctgccaaaaaaatgattgaagaaaaaacaaatgaggtttgggag
tgtcttgcagagattgttgatgggtatcctattatgctcaaccgtgcaccgacactgcat
aaactgtctattcaagcgtttcaccctaaactgatagacggaaaagcaattcaactgcat
ccattggtttgtgcggcattcaatgccgactttgacggggatcagatggctgtacacgtg
ccgctttcttctgccgctattgctgaatgtaaggtattgatgctggcttctatgaatatt
ttgcttcctgcatccggaaaggctattgctacaccttctcaggatatggtccttggtatt
tattatctttcacttgagaaaaacggtgtgaagggttctaacaaactttttgcaaatgtt
gatgagatcagaattgctttagagcatgacgcacttgacctgcatgcaaaggttagaacg
cgtgttgacggacgtattattcatacaacggcaggtcgtcttttgattaaggccattctt
cctgactttgttccggctgagctttggaacaaagtaatgaagaaaaaagctattaatgag
attgttgattatgtacaaaaacacgggggaatcggtatcactgcatctttccttgaccgt
ttgaaagatttgggtttcaaacatgcgacagaagccggtgtatcaatttcagcggatgat
atccgtgtgcctgatatgaaacctgctaaaattgcagagtctaaagcaagagtcattgaa
attcaaaaacagtttgaagcaggacttttgactgaacaggaacgttacaacaagatcatt
gatgtttggacagatacaaacaatacacttgcagcagaaatgatgcaactggtacagacg
gacaaagacggttttaactctattcatatgatggcagattccggtgctcgtggttctgca
gcgcagattcgccagcttgccggtatgcgtggtctgatggcaaaaccgtcaggagaaatt
attgaaactcctattatttcaaactttaaagagggtctgaatgttatcgagtattttatt
tccacacacggtgcgcgtaaaggtctagcagatacggcacttaaaactgccaatgcaggg
tatttgactcgtaaacttgttgatgttgcacagaatgttaaaattgttgagcatgactgt
catacacacgaggggatagagatttctgatatatcagatcaaaatacactgatagaatca
ttggaagacagattgaacggtcgtgttcttgcggatgatgttattgaccctatctccaat
gaaattctttatgctgagggaacgcttttagatgaagtttctgcaaaagttattgctgag
tcaggtatcaaaacagcggtaatcagaacaccgactacatgtaaaagcgaagaaggtgta
tgtgccttgtgttatggtgtgaaccttgcaacaggatatattgttcgtcctggtgaagcg
ataggaattattgcggcacagtcaatcggtgagcctggtacacagttgacattgcgtaca
ttccacgtgggtggaacggcatcttctactgcacaggaacgtcaggttattgcagaaaaa
gaaggttttatccgttattacaacctgaaaacgtataaaaacaaagagggtaaaaacatt
gttgccaaccgtcgtaatgcgggtgttttactggttgaaccaaaaataaaagcaccgttt
gcgggaactgttgaaattcagacgattcatgatgaagtcatcatcagtgtgaaatctgaa
gatgaaactgttcgttattcactgcgtaagcttgaaatagcgaagccgaatgaacttgcg
ggtgtcagcggacagattgaaggaaaatactatttccctcataaaaacggtgtaaaagta
gaggcactggactctattgttgaaacaatcaaagacggatggaatgtacctagtcgtatt
ccgtatgcatcagagttattggtagatgacggtgcacctgttacgaaaaagattcttgca
aaagaagagggtactgtgaaatacttcttgcttaaaggggattaccttgagcggtttgaa
gggctgaagtcaggatatgaagttgtagaaaaaggtctttttgccgctgtaattgacaca
aataaccgtgaagcgattcgtcattatattgcacgcggttcagttattgtaacagatgac
aatgaaggtgtagacagagatacggttattgcgaaaccttcatcagatgagtctgttgta
attgcagaatgggatccatactctaaccctattatctctgaagctaacggtgttgtcaaa
tatgaagatatcattgtcgggacaacagcaagtgagcagcttgatgagttgacaggtaaa
actcgtttgatgattaatgatcacatatcatcagagtataagcctgcaattgtacttgca
acagaagacggagaacttttgcgttatgcgattgagccaaaatcatctgtgtatgttgct
gacggtgctgaagtgaaagtggctgacatattggcaaaaacaccaaaagcattgcaaaag
tcgtcagatattaccgggggtcttccacgtgtatctgaactttttgaaggtcgtcgtcct
aaagcaactgcactgatttctgaaattgacggtgtggtcagctttggaaaaccgcttcgt
ggaaaagtaagaattattgtcagcaatgcagacaacggaattgtaaaagagtattttgtt
gacaaatcacatgagccggttgtaaacccaggtgactttgtacatgccggtgagagattg
actactggtattttatcttctcatgaattattgcgtatcatgggtgttaaagcactctat
aactatcttgtatctgaagtacaacaagtatatcgctctcaaggggttaatattgcagat
aagcacattgaagttatctttacgcaaatgttgcgtcaggtaaaaattgtaaaatctggt
gatacaaaatttattgaaggcgatttggtttctaaagtaaaatttactcaggaaaatgaa
aaaatcatgcgtcttggcggtcgtcctgcaattgctgagccattcttggtgggtattaca
cgtgcggctgtttctgctgatagtattatttcagcggcatcttttcaggatactacgaag
gtattgacagaagcggcagtttctgcgaaagttgataatcttgaaaacctaaaagaaaat
gttattatcggtcgtactattcctgtcggaaccggtatctacaaagatcaaaatatagaa
tttgagattgaagaagagtag
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integrated database retrieval system
