Sulfurimonas sediminis: FJR45_03300
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Entry
FJR45_03300 CDS
T07337
Name
(GenBank) DEAD/DEAH box helicase
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ssei
Sulfurimonas sediminis
Pathway
ssei03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ssei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FJR45_03300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssei03400
]
FJR45_03300
Enzymes [BR:
ssei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FJR45_03300
DNA repair and recombination proteins [BR:
ssei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FJR45_03300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
IstB_IS21
VpsT-like_REC
Motif
Other DBs
NCBI-ProteinID:
QOP43029
UniProt:
A0A7M1AZV5
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All DBs
Position
593913..596906
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AA seq
997 aa
AA seq
DB search
MSQAVLFNHFKNNAQKDALEVLVCEDAKEAYELENVAKFFGRDVVVFPDFRPAYGDDLRS
YKEELHELSFALRKYYFCRKKPLVISPLKTLLFHLPKKELLGEMRLEFGSEINLKEFKEQ
MLYWGYTFVDMVQVAGEISHRGDIIDIFVPSSENPIRISLFDNEIEQIKSFALETQRTLG
DDLESVEIRSAFYALDEASYNELHQKIQKSEFDALNKDVASLGFWHLDELAENFLAGKNV
KLVRNLDNILKDAYGINNPQLPRDAFDLELLEENDAVKELVVVNAAQLLKVHPNKKVTLI
AANNATIKQTGIYDTAGLTIVEAPYILNIITPDELVISLNKADKKRRRRKTSILLDDLKA
GDYVVHEDYGVGIFEKIEKTEILGGVKDFIVIKYVGDDKILLPVENLDYIDRYIAGGGAT
PVLDRLGKGSFGKLKAKVKKRLLEIAGQIVNTAAARALIKAPKISLDKKELEQFQALSGF
EYTDDQTQAVEEILGQMSSGHIMDRLLSGDVGFGKTEIALNTIYAAYKSGYQSAFIVPTT
LLSAQHWRSLDARFKDLGIRYAKLDRFVTTKEKNAVIKGLASGEIDCVVGTHTLFGLEFK
KLGVVIIDEEHKFGVKQKEKIKELYHNVHLLSMSATPIPRSLNQALSSIKTMSQLLTAPS
ERQGVRTFVKEYDEKLIKEVILRELRRGGQVFYVHNSIDHMPIKMGELQALLPDLRMLML
HSKISAVETEKELLKFEAGEYDVMIATSIIESGIHMPRVNTIIVDGADRFGIADLHQLRG
RVGRGHNEGFAYFIVQNKENLTDEAKKRLLALESNSFLGSGSVLAHHDLEIRGGGNLVGD
AQSGHIKNIGYSLYLRMLEDAIKELSNTAEGERAKVDVKLSISAFISDEIVQEDRLRLDI
YRRLSQCENAVEIYEIEEEVIDRFGELDIPTKQFFELMVIKLLSLEKKIKTISNYGQNIT
FTYLNESKETIKSDSKDDDDIIKATLYYLRNSKPKVL
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaggcagttttatttaatcattttaaaaacaatgcacaaaaagatgcacttgaa
gttttggtatgcgaagatgcaaaagaagcatatgagcttgaaaatgtagcaaaatttttt
ggacgtgatgttgttgtttttcccgatttcagaccagcttacggggatgatttgcgttcg
tacaaagaagagttgcacgaactcagctttgccttaagaaaatactatttttgcagaaaa
aaaccacttgtaatatctcctttaaaaacacttctttttcacttgccaaaaaaagagctg
ctcggtgagatgaggcttgagtttggctcagagattaatctcaaagagtttaaagagcag
atgctttactggggatacacttttgttgacatggtacaggttgcaggtgaaatttcccat
cgtggagatattatagatatttttgtaccttcttccgaaaatccgataagaatttctctc
tttgacaatgaaatagaacagataaaatcctttgcgcttgaaacacaaagaactctcggc
gatgatttggaaagtgtagaaattcgaagtgctttttatgcgctggatgaagcatcctac
aatgaattgcatcaaaaaatacaaaagagtgaatttgatgcactcaacaaagatgtagcc
tctttgggattttggcatcttgatgaactggcagagaattttttggcaggcaaaaatgtc
aagcttgtcagaaatctggacaatatactcaaagatgcctacggtataaacaatccgcag
cttccaagggatgcttttgatttggaactactcgaagaaaacgatgccgtcaaagagctg
gttgttgtcaatgctgcgcagcttttaaaagtacatccaaacaaaaaagtaacgctcatt
gctgcaaataatgcaacaataaaacagacgggcatttatgatacagcagggttgaccatt
gtagaggctccttatatattaaatattattacacctgatgagctggttatatcactgaac
aaagccgataaaaaacgccgtagaagaaaaacttctattcttttggatgatttaaaagca
ggtgattatgttgttcatgaagattatggtgtgggtatctttgaaaaaattgaaaaaacc
gaaatactcggcggagtcaaagactttatcgtcatcaaatatgtcggtgatgataaaata
ctgctgcctgtagaaaatctcgactatattgaccgctatattgccggaggcggtgcgaca
cctgtgctggacaggctgggaaaaggaagctttggcaaactcaaagcaaaggtaaaaaaa
agactgcttgagattgcaggacagattgttaacacggcagcagcaagagcactcattaag
gcacctaaaatttctttggacaaaaaagagttagagcagtttcaggcactttcaggtttt
gagtatacagatgatcagactcaggctgttgaggagatactcggacagatgagttcaggg
catataatggacaggcttttaagtggagatgtcggttttggcaaaacagaaattgcactc
aacactatttatgcagcctacaagtcaggctatcagtcggcatttatcgtgccgactaca
ctgctttcagcgcagcactggcgctctttggatgcgcggtttaaagatttgggtatccgt
tatgctaaacttgaccgatttgtcaccacaaaagagaaaaatgcagttattaaagggctg
gcaagcggtgaaatagactgtgttgttgggacacatacgctttttggactggaatttaaa
aagcttggcgtggtgattatagatgaagaacacaagtttggtgtgaaacaaaaagagaaa
atcaaagagctctatcataatgtgcatctgctctctatgagtgcaacgcctattccgcgt
tcactgaatcaggcactcagctccataaaaacaatgagccagcttttaacagcgccgagt
gagcgccaaggggtcagaacttttgtcaaagagtatgatgaaaagctgataaaagaggtt
attttgagagaacttcgccgtggcggtcaggtcttttatgtgcacaattcaattgatcat
atgccgataaaaatgggggaactgcaggcactcttgcctgacttgagaatgcttatgctg
cattctaaaatatcagcggttgaaacagaaaaagagctgctgaaatttgaagcaggcgaa
tatgatgtcatgatagctacttccattattgagagtggtatccatatgcctcgtgtcaac
accatcattgtggacggtgcagacagatttggtatagcagatttacatcagcttcgcgga
cgtgtaggccgtggccacaatgagggttttgcctattttattgtacaaaacaaagaaaat
ttgacagatgaagccaaaaaacgtcttttggcattggaatcaaactcctttttaggttcg
ggttctgtgctggcacatcatgatttggaaattcgcggcggcggaaatcttgtaggggat
gcacaaagcggacatattaaaaatatcggctactctttgtatcttcgaatgcttgaagat
gccataaaagagttgagcaatacagccgagggagagcgggcaaaggtagatgtgaaactg
agcatatccgcttttatcagtgatgaaattgtgcaagaagacagattgcgtttggatatc
tacagaagactttcacagtgtgaaaatgctgtggagatttacgagatagaagaagaggta
attgaccgttttggtgagttggatattcctacaaaacagttttttgaactgatggttatt
aaacttttgtccctggagaaaaaaatcaaaacgatttcaaactatggacaaaatatcaca
tttacctatttaaatgagtctaaggagacaataaaatcagattcgaaagatgatgatgac
attatcaaagcaacactgtactatttaagaaacagcaaaccaaaagtgctctaa
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