Sulfurimonas sediminis: FJR45_07340
Help
Entry
FJR45_07340 CDS
T07337
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ssei
Sulfurimonas sediminis
Pathway
ssei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FJR45_07340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssei03019
]
FJR45_07340
Enzymes [BR:
ssei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FJR45_07340
Messenger RNA biogenesis [BR:
ssei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FJR45_07340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
P-loop_SecA
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
QOP43773
UniProt:
A0A7M1B220
LinkDB
All DBs
Position
1367199..1368443
Genome browser
AA seq
414 aa
AA seq
DB search
MTFNSLGLSAPILKAVKEQGYDTPTPIQAKAIPVILQKKDILAGAQTGTGKTAGFTLPLL
ELLSRKKSSKQKHKVRALILTPTRELALQVAENVTLYAKHTPFKSTVIFGGVKINPQIAQ
LRKGVEIVIATPGRLLDHISQKTIDLREIEFLVLDEADRMLDMGFVNDIKKIVNIIPQER
QTLLFSATYSDAIKKLSNQFLKSPTLIEVARTNESNTSVAQSVYPVDKTRKRELLTHLIN
EGKWQQVLVFTRTKHGANKLSGQLENEGISSVAIHGNKSQNARTKALADFKKGDVRVLVA
TDIAARGIDIDQLPHVVNFELPNVSEDYVHRIGRTGRAGNKGEAISLVCVDEDEFLQNIE
KLIKKDIQKVWLKGFKPDPSIKAEPINMGGNRGARNKPRGNSRGSNANRSRGRR
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
attacatttaattcactcggtctttcagcgccgattttaaaagctgtcaaagaacagggc
tatgatacgcctacacccattcaggcaaaagcgattcccgtcattttacaaaaaaaagat
attttggcaggtgctcagacaggtactggaaagactgcaggttttacactgccgctttta
gagttgctttcacgcaaaaagtcttcaaaacaaaaacacaaagtccgtgcacttattttg
acaccgacacgcgagcttgcactgcaggttgccgaaaatgtgacactctatgcaaaacac
accccttttaaatcaactgttatttttggcggtgtaaaaataaacccgcaaattgcacag
ttgcgaaaaggcgttgagattgtcatcgcaacaccgggccgtctgcttgatcacatctct
caaaaaacaatagatttacgcgaaatagagtttttggtacttgatgaagccgacagaatg
ctggatatgggttttgtaaacgacattaaaaaaatcgtcaacatcatcccacaagagcgt
cagactctccttttttcggcaacctattccgatgccattaaaaaactctcaaatcaattt
ttaaaatctccgacactcatcgaagttgcaagaaccaatgagtcaaacaccagtgtagca
cagagtgtctatcctgtagacaaaacgagaaaaagagagcttctgacacaccttataaac
gaagggaagtggcagcaggtacttgtttttacacggacaaaacacggtgcgaacaaactc
agcggacagcttgaaaatgagggcatctcctctgtggcaatccatggaaacaaaagccaa
aatgcacgaacaaaagcacttgctgactttaaaaaaggcgatgttcgggttttggtggca
acagatattgcagcacgcggcattgacatagaccagctccctcatgttgtcaactttgaa
ctgccaaatgtcagtgaagattatgtgcatcgcatcgggcgaacaggccgtgcaggaaac
aaaggagaagctatatcacttgtgtgtgtagatgaagatgagtttttgcaaaatatagaa
aaattgataaaaaaagatatacaaaaagtatggcttaaagggtttaaaccagatccgagc
atcaaagcagaacctatcaatatgggtggaaatcgtggagctagaaacaagcccagagga
aactcccgcggctcaaatgccaacagaagcagaggaagaagataa
DBGET
integrated database retrieval system
