Sulfurimonas sediminis: FJR45_09105
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Entry
FJR45_09105 CDS
T07337
Name
(GenBank) VacB/RNase II family 3'-5' exoribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ssei
Sulfurimonas sediminis
Pathway
ssei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FJR45_09105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssei03019
]
FJR45_09105
03016 Transfer RNA biogenesis [BR:
ssei03016
]
FJR45_09105
Enzymes [BR:
ssei01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FJR45_09105
Messenger RNA biogenesis [BR:
ssei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FJR45_09105
Transfer RNA biogenesis [BR:
ssei03016
]
Prokaryotic type
tRNA degradation factors
FJR45_09105
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNR_2nd
OB_RNR_1st
CSD2
ECR1_N_2
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
QOP44090
UniProt:
A0A7M1B359
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All DBs
Position
1698694..1700634
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AA seq
646 aa
AA seq
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MKSLLIRLTHGLNEQDITEEELPVVREWLAKKYLTHKHNIYKFNSKYRAGVLGLVQKGTA
YLHVIGENIKDLYINENNLGLANEGDLVIAQRLLGHRGQPSAKIVEIVGKEQTYSVAYII
EKEGRKALVDLKTEYPVGAEMATEELNNCAMGDLFKVDNNENKIMEKIGNIKDPKSDEKI
VLAQFNKHDAFDEEVLKIARSFKPVDASKYPKRKDLRDLTFCTIDPVTAKDFDDAIYWDD
KNTTLYVAIADVSEYVTPFGPIDTEAIYRSFSIYLPHRSIPMLPRELSETLCSLQPHVDR
LAYVFEIKLDVKTLEVVKSEVYEALMHSDRRFNYEEIDLFLENRLQAKTQEEKEIFAWIK
KLKTVTDRLRAKRLQEGFDFHSTEIEMTLDENTNLVATTLAQETPSHGLIEDCMLLANKE
AAKRYKRGLFRIHEPPSQAKLQKLYQELAGIGIHVEIKNTIKETIDSIQKQAKEMGIEAE
VDTLIIQSQMQARYSPVNVGHFGLGFKEYTHFTSPIRRYSDLIVHRLLKAINRGDTQEQS
YVLRNIESLSMAISEKEREAMIIESEYKARKYARWAAQNLHKEFKARITSTDPELRAELH
DEIIGARLHFTSGADVTLFEDVIVRIDKVNIARARIYASVVGKIEK
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatcactacttatacgcctcactcatggactcaatgaacaagacatcacggaagaa
gaactccctgtagtacgcgaatggcttgcaaaaaaatacctgacacacaagcataatata
tataaattcaactccaaataccgtgccggagttctaggacttgtccaaaaaggaacagca
tatttacatgtaataggcgagaatattaaagacctctatatcaatgaaaacaatctcgga
cttgccaatgaaggggatttggtcattgcgcagagacttttaggccacagagggcagcca
agtgccaaaatagtagagatagtcgggaaagaacagacctacagtgtcgcctatattata
gaaaaagagggacgaaaagctttggttgatcttaaaaccgagtatcccgtcggtgctgaa
atggcaacagaagagctcaataactgtgcgatgggtgacctttttaaagttgacaacaat
gaaaataaaatcatggaaaaaataggcaacatcaaagacccgaaatctgatgagaaaatt
gttcttgcccagtttaacaagcatgatgcatttgatgaagaggttttaaaaatcgcccgc
tctttcaagcctgttgatgcttcaaaatatccaaaacgaaaagatttaagagatttgaca
ttttgtacgatagaccctgtgactgcaaaagattttgacgatgccatctactgggatgac
aaaaacacaaccctctatgttgccatcgcagatgtcagtgaatatgtcacaccttttggt
cccatagataccgaagcaatttacagaagtttttctatttacctgccgcatcgttctatt
cctatgctgccaagagagctcagtgaaaccttatgttctttgcaaccccatgttgacaga
cttgcctatgtatttgaaatcaaacttgatgtaaaaactcttgaagtcgtaaaatctgaa
gtttatgaggcacttatgcactctgacagaagatttaactatgaagagattgacctcttt
ttagaaaatagactccaggcaaaaacacaagaagaaaaagagatatttgcctggataaaa
aagctcaaaacagtcacagacagattacgggcaaaacgtctgcaggaaggttttgacttt
cattctacagaaatagagatgactctggatgaaaacacaaaccttgtagccacaaccctt
gcccaagaaactccttctcacgggctcatagaagactgtatgctcttagcaaacaaagaa
gcggcaaaacgctataaacgggggctttttaggattcatgaaccgccaagtcaggcaaaa
cttcagaagctttatcaagaactggccggcataggcatacatgtagagattaaaaacact
atcaaagaaacgatagattccatccagaaacaggccaaagagatgggtattgaagcggaa
gtggatacccttattattcagtctcagatgcaggcacgatattcccctgtaaatgtcgga
cactttgggctgggttttaaagagtacacccattttacctcgcccatcagaaggtacagt
gatttaattgtgcacagacttttaaaagcgattaacagaggcgacacacaggaacagtct
tatgttttaagaaatattgaatcactcagtatggctatcagtgaaaaagagcgtgaggcg
atgatcatagagtccgaatacaaagcacgcaaatatgcaagatgggcagcgcagaatctg
cacaaagagtttaaagcaagaatcacgagcacagatccggagctgcgggcagagctgcat
gatgaaatcattggcgcaagactgcattttacctcgggtgcggatgtgacactgtttgaa
gatgtcattgtacgaattgataaagtcaatatagcaagagcacgaatatatgcctcggta
gtcgggaaaatagaaaaataa
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