Streptomyces sediminicola: VM636_20035
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Entry
VM636_20035 CDS
T11831
Name
(GenBank) ATP-dependent RecD-like DNA helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
ssel Streptomyces sediminicola
Pathway
ssel03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ssel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
VM636_20035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssel03400
]
VM636_20035
Enzymes [BR:
ssel01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
VM636_20035
DNA repair and recombination proteins [BR:
ssel03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VM636_20035
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
OB_YrrC
UvrD_C_2
SH3_13
Viral_helicase1
AAA_11
HHH_5
AAA_22
NAT10_TcmA_helicase
AAA_16
PIF1
PhoH
TraI_hel_assoc_N
NPHP3_N
HTH_IclR
nSTAND3
AAA
TrwB_AAD_bind
DEAD
UvrD_C
Motif
Other DBs
NCBI-ProteinID:
WVW69611
LinkDB
All DBs
Position
4549731..4551989
Genome browser
AA seq
752 aa
AA seq
DB search
MGKQVGDSPGERRLAVLEGVLERITYANEENGYTVARVDTGRGAGDLLTVVGALLGAQVG
ESLRMEGRWGSHPQYGKQFHVENYTTLLPATVQGIRRYLGSGLVKGIGPVFADRITQHFG
LDTLTVIEEEPKRLIEVPGLGPKRTKKIADAWEEQKAIKEVMLFLQTVEVSTSIAVRIYK
KYGDASISVVRNQPYRLAADVWGIGFLTADRIAQSVGIPHDSPERVKAGLQYALSQATDQ
GHCYLPEERLIADAVKLLQVDTGLVIECLADLAAVPEEGRDPGVVREKVPGPDGDGPVTA
VYLVPFHRAELSLAAQVLRLLRTGEDRMAGFRDVDWTKALGWLKGRTGTDLAPEQEAAVR
LALTEKVAVLTGGPGCGKSFTVRSVVELARARKAKVVLAAPTGRAAKRLAELTGAEASTV
HRLLELKPGGDAAYDRDRPLDADLVVVDEASMLDLLLANKLVKAVPPGAHLLFVGDVDQL
PSVGAGEVLRDLLAEGGPVPAVRLTRVFRQAQESGVVTNAHRINAGRPPLTDGLKDFFLF
VEDDTEETGRLTVDVAARRIPARFGLDPRRDVQVLAPMHRGPAGAGTLNGLLQQAVTPGR
PDLPEKRFGGRVFRVGDKVTQIRNNYEKGENGVFNGTVGVVTALDPVDQRLTVRTDEDEE
VAYDFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKKLVVL
VGSRKAIGQAVRTVSAGRRCTALDFRLTGADA
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atgggcaagcaggtcggggattccccgggggagcggcggctcgcggtgctcgaaggggtg
ctggagcggatcacctacgccaacgaggagaacgggtacacggtcgcccgggtcgacacc
gggcggggcgccggcgacctgctcaccgtcgtcggcgcgctgctcggcgcccaggtcggc
gagtcgctgcggatggagggccgctgggggtcgcacccccagtacgggaagcagttccac
gtcgagaactacacgacgctcctgcccgccaccgtccagggcatccggcgctacctcggt
tccggcctggtcaagggcatcgggccggtcttcgccgaccgcatcacccagcacttcggc
ctcgacaccctgaccgtcatcgaggaggagcccaagcggctgatcgaggtgcccggcctc
ggccccaagcggaccaagaagatcgccgacgcctgggaggagcagaaggcgatcaaggag
gtcatgctgttcctccagaccgtcgaggtgtccacctccatcgccgtgcgcatctacaag
aagtacggcgacgcctcgatctccgtggtgcggaaccagccctaccgcctcgccgccgac
gtgtggggcatcggcttcctcaccgccgaccgcatcgcccagtcggtcggcatcccgcac
gacagtccggagcgggtcaaggcgggcctccagtacgccctgtcgcaggccaccgaccag
ggccactgctacctccccgaggaacggctcatcgccgacgcggtgaagctgctccaggtc
gacaccggcctcgtcatcgagtgcctggccgacctggccgccgtaccggaggagggccgg
gaccccggcgtcgtccgggagaaggtgcccggcccggacggcgacgggccggtcaccgcc
gtctacctggtccccttccaccgcgccgaactctccctcgccgcccaggtgctgcgcctg
ctgcgcaccggggaggaccggatggccggcttccgggacgtggactggacgaaggcgctc
ggatggctgaaggggcgcacgggcaccgacctcgcgcccgagcaggaggcggccgtccgc
ctcgcgctgaccgagaaggtcgccgtgctcaccggcggccccggctgcggcaagtccttc
acggtccgctcggtcgtcgaactggcccgcgcgcgcaaggcgaaggtcgtcctggccgcc
ccgacgggccgggccgccaagcgcctggccgaactgaccggcgccgaggcgtccaccgtg
caccggctgctggagctgaagcccggtggcgacgccgcctacgaccgggaccggccgctc
gacgccgacctcgtggtggtggacgaggcgtccatgctcgacctgctcctcgccaacaag
ctggtcaaggccgtgccgcccggcgcgcacctgctcttcgtcggggacgtcgaccagttg
cccagcgtcggcgccggggaggtgctgcgggacctgctggccgagggcggccccgtcccc
gccgtccggctcacccgcgtcttccgccaggcccaggagtccggtgtggtgaccaacgcg
caccgcatcaacgcgggacggcccccgctcaccgacggtctgaaggacttcttcctcttc
gtcgaggacgacacggaggagaccggccggctcaccgtggacgtcgccgcccgccgcatc
ccggcccgtttcggcctggacccgcgccgcgacgtgcaggtcctcgccccgatgcaccgg
ggcccggccggcgcgggcacgctcaacggactcctccagcaggccgtcaccccgggccgg
ccggacctgccggagaagcggttcggcggccgggtcttccgcgtcggcgacaaggtcacc
cagatccgcaacaactacgagaagggcgagaacggcgtcttcaacggcaccgtcggcgtc
gtcaccgcgctcgacccggtggaccagcgcctgaccgtccgcaccgacgaggacgaggaa
gtcgcctacgacttcgacgaactcgacgaactggcccacgcctacgccgtcaccatccac
cgttcccagggcagcgagtacccggcggtcgtcatcccggtcaccaccggcgcctggatg
atgctccagcgcaacctgctctacacggcggtcacccgggcgaagaagctggtcgtcctc
gtcggctcccgcaaggcgatcgggcaggcggtgcgcacggtctcggccgggcggcgctgc
acggccctcgacttccggctcacgggcgccgacgcctga
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