Streptomyces sediminicola: VM636_24515
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Entry
VM636_24515 CDS
T11831
Name
(GenBank) DEAD/DEAH box helicase
KO
K03727
ATP-dependent RNA helicase HelY [EC:
5.6.2.6
]
Organism
ssel Streptomyces sediminicola
Brite
KEGG Orthology (KO) [BR:
ssel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssel03019
]
VM636_24515
Enzymes [BR:
ssel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
VM636_24515
Messenger RNA biogenesis [BR:
ssel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
VM636_24515
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
SH3_HelY
DEAD
ResIII
Helicase_C
DEXQc_Suv3
MTR4-like_stalk
AAA_22
nSTAND_NTPase5
nSTAND3
ENT
Motif
Other DBs
NCBI-ProteinID:
WVW70430
LinkDB
All DBs
Position
5565360..5568212
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AA seq
950 aa
AA seq
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MIVLLSVRPGTLESTMTEDLSPAERYAAARRRAAEQATALASFREMYDFGLDPFQIEACQ
ALEAGKGVLVAAPTGSGKTIVGEFAVHLALQQGRKCFYTTPIKALSNQKYADLCRRYGAD
RVGLLTGDNSVNPDAPVVVMTTEVLRNMLYAGSQTLLGLGYVVMDEVHYLSDRFRGAVWE
EVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGDTQVIVSEHRPVPLFQHVLAGRRMYD
LFEEGEGRKRAVNPDLTRMARMEASRPSYQDRRRGRSMREADRERERRQRARIWTPSRPE
VIERLDSEGLLPAITFIFSRAGCEAAVQQCLYAGLRLNDEEARERVRALVEERTASIPAE
DLHVLGYYEWLEGLERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPAR
SVVLEKLVKWNGEQHADITPGEYTQLTGRAGRRGIDVEGHAVVLWQRAMSPEHLAGLAGT
RTYPLRSSFKPSYNMAVNLVEQFGRHRSRELLETSFAQFQADKSVVGISRQVQRNEEGLE
GYRASMTCHLGDFEEYARLRRELKDRETELVRQGAAQRRAEAAVALERLKPGDVIHVPTG
KYAGLALVLDPGLPAGRSNGHRGFDHHDGPRPLVLTAERQVKRLAAMDFPVPVEALERMR
IPKSFNPRSPQSRRDLASALRTKAGHIDVERHRKKRSQAADDRQIARLRKEIRAHPCHGC
DDREDHARWAERYHRLMRDTSQLERRIDGRTNTIARTFDRIVALLTELDYLREDEVTEHG
KRLARLYGELDLLASECLREGVWEGLGPAELAACVSALVYESRAADDAMAPKLPSGRAKA
ALGETVRIWGRLDALEEEFRISQTEGVGQREPDLGFAWAAYMWCSGKGLDEVLREAEMPA
GDFVRWCKQVIDVLGQIAAAAPREGSTVPKAARKAVDGLLRGVVAYSSVG
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atgatcgtcctgttgtcggtgcggcccggtacgctcgaaagcacgatgacagaggatctc
tccccggccgagcggtacgcggcagcccgcagacgcgccgccgagcaggccaccgcgctc
gcctccttccgcgagatgtacgacttcggcctcgacccgttccagatcgaggcatgccag
gccctggaggcgggcaagggcgtcctggtggccgcgcccaccggctccggcaagacgatc
gtcggcgagttcgccgtgcacctcgccctccaacagggccgcaagtgcttctacacgacg
cccatcaaggcgctgtccaaccagaagtacgccgacctgtgccgacgctacggagcggac
cgggtgggcctgctcaccggcgacaacagcgtgaacccggacgccccggtggtcgtgatg
accaccgaggtcctgcggaacatgctctacgccggttcgcagaccctgctcggcctcggg
tacgtggtcatggacgaggtgcactacctctccgaccgcttccgcggcgcagtctgggaa
gaggtgatcatccacctccccgagtcggtgaccctggtctcgctgtcggccaccgtgtcg
aacgccgaggagttcggcgactggctcgacaccgtgcgcggcgacacccaggtgatcgtc
tccgagcaccggcccgtgccgctgttccagcacgtcctggccgggcggcggatgtacgac
ctgttcgaggagggtgagggccgcaaacgggccgtcaacccggacctcacccgcatggcg
cggatggaggcgagccgcccctcgtaccaggaccgccggcgcgggcggtcgatgcgggag
gccgaccgggagcgcgagcgccgccagcgcgcccggatctggacgccgagccggcccgag
gtcatcgaacggctcgactccgagggcctgctgcccgcgatcaccttcatcttcagccgg
gccggctgcgaggccgccgtccagcagtgcctgtacgccgggctgcggctcaacgacgag
gaggcacgtgagcgggtgcgcgccctggtcgaggagcgcaccgcctccatccccgccgag
gacctgcacgtcctcgggtactacgaatggctggagggcctggagcggggcatcgccgcg
caccacgcgggcatgctgccgaccttcaaggaggtcgtggaggagctgttcgtccgcggg
ctggtcaaggccgtcttcgccaccgagaccctcgccctcggcatcaacatgcccgcccgt
tcggtggtgctggagaagctcgtcaagtggaacggcgagcagcacgccgacatcaccccc
ggcgagtacacccagctcaccggccgggccggccggcgcggcatcgacgtcgagggccac
gccgtggtgctctggcagcgcgccatgagccccgagcacctcgccggactggccggcacg
cgcacgtacccgctgcgctccagcttcaagccgtcgtacaacatggcggtcaacctggtc
gagcagttcggccggcaccgctcgcgcgaactgctggagacctccttcgcccagttccag
gcggacaagtcggtcgtcggcatctcccgccaggtgcagcgcaacgaggagggactggag
gggtaccgggcctccatgacctgtcacctcggcgacttcgaggagtacgcgcggctgcgc
cgggagctgaaggaccgtgagaccgaactggtccgccagggggcggcccagcggcgtgcc
gaggccgcggtggcgctggagcggctgaagcccggcgacgtcatccacgtccccaccggc
aagtacgcgggcctcgccctggtgctggaccccggcctgcccgccgggcggtccaacggc
caccggggcttcgaccaccacgacggtccgcgccccctggtgctcaccgccgaacggcag
gtcaagcggctggcggcgatggacttcccggtgccggtggaggcgctggagcggatgcgc
atcccgaagtccttcaatccgcgctccccgcagtcccgccgtgacctcgcctcggcgctg
cgcaccaaggccgggcacatcgacgtcgagcggcaccgcaagaagcgctcccaggccgcc
gacgaccggcagatcgcccggctgcgcaaggagatccgggcgcacccctgccacggctgt
gacgaccgcgaggaccacgcccgctgggccgagcgctaccaccggctgatgcgcgacacc
tcgcagctggagcgacggatcgacgggcggacgaacaccatcgcccgcaccttcgaccgg
atcgtggcgctcctgacggaactggactacctgcgcgaggacgaggtcaccgagcacggc
aagcggctcgcccggctctacggcgaactcgacctgctggccagcgagtgcctgcgcgag
ggcgtctgggagggcctcggccccgccgaactggccgcctgcgtctcggcgctggtctac
gagtcccgtgccgccgacgacgccatggcgccgaagctgccctcgggccgggccaaggcc
gcgctcggcgagacggtccgcatctggggccggctcgacgcgctggaggaggagttccgg
atcagccagaccgaaggcgtgggccagcgcgagcccgacctcggcttcgcctgggccgcg
tacatgtggtgctccggcaagggcctcgacgaggtgctgcgggaggcggagatgccggcc
ggcgatttcgtgcgctggtgcaagcaggtcatcgacgtcctcggccagatcgccgccgcc
gcgccccgcgagggctcgacggtcccgaaggcggcgcgcaaggcggtcgacggactgctg
cgcggggtggtcgcctactcctcggtgggctag
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