Shewanella sedimentimangrovi: JYB85_00095
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Entry
JYB85_00095 CDS
T07846
Symbol
fadB
Name
(GenBank) fatty acid oxidation complex subunit alpha FadB
KO
K01825
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
5.3.3.8
]
Organism
ssem
Shewanella sedimentimangrovi
Pathway
ssem00071
Fatty acid degradation
ssem00280
Valine, leucine and isoleucine degradation
ssem00310
Lysine degradation
ssem00362
Benzoate degradation
ssem00380
Tryptophan metabolism
ssem00410
beta-Alanine metabolism
ssem00640
Propanoate metabolism
ssem00650
Butanoate metabolism
ssem00907
Pinene, camphor and geraniol degradation
ssem00930
Caprolactam degradation
ssem01100
Metabolic pathways
ssem01110
Biosynthesis of secondary metabolites
ssem01120
Microbial metabolism in diverse environments
ssem01200
Carbon metabolism
ssem01212
Fatty acid metabolism
Module
ssem_M00087
beta-Oxidation
Brite
KEGG Orthology (KO) [BR:
ssem00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
JYB85_00095 (fadB)
00650 Butanoate metabolism
JYB85_00095 (fadB)
09103 Lipid metabolism
00071 Fatty acid degradation
JYB85_00095 (fadB)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
JYB85_00095 (fadB)
00310 Lysine degradation
JYB85_00095 (fadB)
00380 Tryptophan metabolism
JYB85_00095 (fadB)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
JYB85_00095 (fadB)
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
JYB85_00095 (fadB)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
JYB85_00095 (fadB)
00930 Caprolactam degradation
JYB85_00095 (fadB)
Enzymes [BR:
ssem01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
JYB85_00095 (fadB)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
JYB85_00095 (fadB)
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
JYB85_00095 (fadB)
5.3 Intramolecular oxidoreductases
5.3.3 Transposing C=C bonds
5.3.3.8 Delta3-Delta2-enoyl-CoA isomerase
JYB85_00095 (fadB)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
3HCDH
ECH_2
NAD_binding_2
DUF3048
Motif
Other DBs
NCBI-ProteinID:
QSX37301
LinkDB
All DBs
Position
complement(23751..25892)
Genome browser
AA seq
713 aa
AA seq
DB search
MIYQSPTIEVELTDDKIARLCFNSSGSVNKFDRETLASLDAALDSVKAADAKALLLTTGK
DAFIVGADITEFQGLFAEDEATLLTWLEQANLVFNKLEDMPFPTASAVKGFALGGGCEAI
LATDFRIADSSARIGLPETKLGLIPGFGGTVRLPRLIGADNAMEWITTGKDQRPEDALKV
GAVDAVTAPEQLEAAAIAMLKDAIAGKLDWQARRARKQAPLTLPKLEAMMSFTTAKGMVF
AVAGKHYPAPMAAVTLIEQVAGQGRAEALKAEHQAFIKLAKTEVATALIGIFLNDQLVKG
KAKKAGKQAKAINQAAVLGAGIMGGGIAYQSASKGTPIVMKDIAQGALDLGLNEAAKLLT
AQVERGRLTADKMAKVLNNITPALEYAPIKHADIVVEAVVENPKVKAMVLAEVESQLGDE
AIIASNTSTISINHLAKSLKHPERFCGMHFFNPVHKMPLVEVIRGEHSSDETIASVVAYA
SKMGKTPVVVNDCPGFFVNRVLFPYFAGFSGLLADGADFAAIDKVMEKQFGWPMGPAYLL
DVVGLDTGHHAQAVMAEGFPDRMGKNGKDAIDVMYEAQRLGQKNGKGFYQYSVDKRGKPK
KERDVVAYELLQAAFGEQKSFEADEIIARTMIPMIIETVRCLEEGIIASPAEGDMGLVYG
LGFPPFRGGVFRYLDTMGLANFVALADKYAHLGGLYQVTDAMRDLAANNGSYY
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgatctaccaaagccctaccattgaggtcgaactgaccgatgacaagattgcccggctg
tgtttcaactccagcggctcggtcaacaagttcgatcgcgaaaccctggcgtccctggat
gccgcgctggacagtgtcaaagccgccgatgccaaggcgctgctgctgaccacaggcaaa
gatgcctttattgtcggcgccgacattaccgaattccaaggcttgtttgccgaagacgag
gccaccctgttgacctggctggaacaggccaacctggtattcaacaagctcgaagacatg
ccctttcctaccgcctctgccgtgaagggctttgccctgggtggtggctgtgaagccata
ctggcaaccgatttccgtatcgccgacagcagtgccaggattggtctgccagaaaccaag
ctgggcctgatccccggcttcggcggcacagtacgcctgccacgcctgataggcgcggac
aatgccatggagtggatcaccactggcaaagatcagcgtcccgaagatgccctcaaggtc
ggtgccgttgatgcagtgactgctccagagcagctggaagccgcagccattgccatgctc
aaggatgccatcgccggcaaactggactggcaggcccgccgtgcccgtaagcaagcacct
ctgaccctgcccaagctggaagccatgatgtctttcaccacggccaagggcatggtgttc
gcggtggcaggcaagcattaccccgcccccatggcggcagtcactctcatagaacaagtg
gccggccaaggccgtgccgaagcactcaaggctgaacaccaggcctttatcaaactggcc
aagaccgaggtggctaccgcccttatcggtattttcctcaatgaccaattggtcaagggc
aaggccaagaaggccggcaagcaggccaaggccatcaatcaggccgccgtactcggcgcc
ggtatcatgggtggaggcattgcataccagagcgccagcaagggcactcccatagtcatg
aaagatatagcccagggcgcattggatctggggctcaatgaagcggccaaactgctgacc
gcccaggttgaacgtggtcgtctgaccgctgacaagatggccaaggtgctgaacaacatc
accccggccctggaatacgcccccatcaagcacgccgacattgtggtcgaagccgtagtg
gaaaaccccaaggtcaaggccatggtactggccgaagtggagtcccagttgggcgatgag
gccatcattgcctccaatacttctaccatctccatcaatcatctggccaagagtctcaag
catcccgagcgcttctgcggtatgcacttctttaacccggtacacaagatgccgctggtg
gaagttattcgcggtgagcacagcagcgacgaaaccatagcctctgtggtggcctacgcc
agcaagatgggtaagaccccggttgtggtgaacgactgccccggcttcttcgtcaaccgg
gtgctgttcccctactttgccggcttcagcggtctgttggccgacggcgcagacttcgcc
gccatcgataaggtgatggagaagcaatttggctggccaatgggccctgcctatctgctg
gacgtggttggtttggacaccggtcaccatgcccaggccgtgatggccgaaggcttcccc
gaccgtatgggcaagaatggcaaagatgccatagatgttatgtacgaggcccaacgtctg
ggacaaaagaacggcaagggtttctatcagtacagcgtcgacaagcgcggcaagcccaag
aaggaacgggacgttgtcgcatatgagctgctgcaggccgccttcggtgagcagaagtcc
tttgaagccgacgagatcattgcccgcaccatgatccccatgatcattgaaaccgtgcgt
tgtctggaggaaggcatcattgcttctccggccgaaggcgatatgggcctggtgtacggt
ctgggcttccctccgttccgtggcggcgtcttccgttacctggataccatgggcctggct
aacttcgttgccctggcagacaagtatgcccacctgggcggcctgtatcaggtcaccgat
gccatgcgcgacctcgccgccaacaacggcagctactactag
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