Shewanella sedimentimangrovi: JYB85_00920
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Entry
JYB85_00920 CDS
T07846
Symbol
trmA
Name
(GenBank) tRNA (uridine(54)-C5)-methyltransferase TrmA
KO
K00557
tRNA (uracil-5-)-methyltransferase [EC:
2.1.1.35
]
Organism
ssem
Shewanella sedimentimangrovi
Brite
KEGG Orthology (KO) [BR:
ssem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ssem03016
]
JYB85_00920 (trmA)
Enzymes [BR:
ssem01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.35 tRNA (uracil54-C5)-methyltransferase
JYB85_00920 (trmA)
Transfer RNA biogenesis [BR:
ssem03016
]
Prokaryotic type
tRNA modification factors
Methyltransferases
JYB85_00920 (trmA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_25
Methyltransf_15
Methyltransf_4
PrmA
Cons_hypoth95
MTS
Methyltransf_11
TRM5-TYW2_MTfase
Methyltransf_12
DREV
Methyltransf_31
Motif
Other DBs
NCBI-ProteinID:
QSX37454
LinkDB
All DBs
Position
complement(216483..217583)
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AA seq
366 aa
AA seq
DB search
MNLAAMDPRQYDAQLADKSQSLIEAFAEFTPPALEVFASEPAHYRMRSEFRVWHDGDDLY
YYMFDNALQQKVRCDQYLPAGTLINQMMLELMTHLRPNPVLRHKLFQVDFLSTLSGEILV
SLLYHRQLGDDWLEQAKALKAALSDRFKVDIIGRARKQKLILDRDFVVETLDVNGRQYHY
KQIENSFTQPNAKVAVKMLEWAIDATQNSQGDLLELYCGNGNFSIALAQNFQRVLATELA
KPSVDAAQYNIAINNIANLDIIRMSAEDFTLAMQGGKSFKRLEGIDLQSYDCNTIFVDPP
RAGLDAETVKLVQGYERILYISCNPETLKDNLAVLSQTHEITRFALFDQFPYTHHTEAGV
LLERRK
NT seq
1101 nt
NT seq
+upstream
nt +downstream
nt
atgaatttagcagcaatggatccccggcagtatgatgcccagttggcggacaagagccag
tcactgatagaggcctttgccgaattcacacctccggcattggaagtcttcgcctctgaa
ccggcccactatcggatgcgcagtgaattccgggtatggcacgatggagacgatctctac
tattacatgttcgataatgccctgcagcaaaaggttcgctgtgaccaatatctgccggcc
ggcacgctcatcaaccagatgatgctggagttaatgacacatctgcgacccaatcccgtg
ctgcgccacaagctgttccaggtggattttctgtccacgctctcaggggaaattctggtc
agcctgctctaccacaggcagcttggggatgattggctggagcaagccaaagccctgaaa
gctgcgctgtctgaccggttcaaggttgacattataggccgcgccagaaaacagaaactg
atactggaccgggattttgtggttgagactctggatgtcaatggtcgccaataccattac
aaacagatagaaaacagctttacccaacccaatgccaaggtggcggtcaaaatgctggaa
tgggccattgatgccacccaaaacagtcagggcgatctgctggaactctattgcggtaac
ggcaatttctccattgccctggcgcagaattttcagcgggtattggcgaccgaactggcc
aaaccgtctgtggatgcggcccagtacaacatcgccatcaacaacatagccaatctggat
ataatccgcatgtcagcggaagacttcaccctggcaatgcagggtggtaaaagctttaag
cgccttgagggtatcgatctgcaaagctatgactgcaacaccatctttgtggacccaccc
agagcgggtttggatgcggagacggtcaaactggtgcagggctatgagcgcattctctat
atctcctgcaatcctgagactctgaaggacaacctggcagtgctcagccaaacccacgag
atcactcgctttgccctgttcgatcagttcccttatacccatcacaccgaagcgggtgtg
ttgctggagcgtcgtaaataa
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