Shewanella sedimentimangrovi: JYB85_01045
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Entry
JYB85_01045 CDS
T07846
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ssem
Shewanella sedimentimangrovi
Pathway
ssem03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ssem00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JYB85_01045 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssem03021
]
JYB85_01045 (rpoC)
03400 DNA repair and recombination proteins [BR:
ssem03400
]
JYB85_01045 (rpoC)
Enzymes [BR:
ssem01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JYB85_01045 (rpoC)
Transcription machinery [BR:
ssem03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JYB85_01045 (rpoC)
DNA repair and recombination proteins [BR:
ssem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JYB85_01045 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QSX37468
LinkDB
All DBs
Position
238843..243057
Genome browser
AA seq
1404 aa
AA seq
DB search
MKDLLKFLKQQSKTEEFNGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVIEPGMTSLERGQMLTEETYLDALEEYGDEFEAKM
GAEAVLELLRAIDLAKEIEQMREELPSINSETRRKKVTKRLKLMEAFYTSGNKPEWMILK
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREVAEVWDVLDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYTSRERVNGRGEGMAFESVAEAEKAYRTG
AAELHARVKVRITETQIADNGERTQVRRIVDTTVGRALLSQILPAGLSFDLVNQDMGKKQ
ISKLLNTCYRQLGLKDTVIFADQLMYTGFHFATISGASVGINDMVIPDEKYTLVAEAEAE
VLEIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMENLSTETVINRQGEEEKQKSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVIEEDCGTFEGLTMKPLIEGGDVVEPLRERVL
GRVVAEDVFFPGTEDVLAPRNTLLDEAWCDKLEQHSVDEVIVRSVITCDTDFGVCAACYG
RDLARGHLINHGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENSVQVKNAGTLKL
HNAKHVTNSDGKLVIVSRSSELAIIDELGREKERYKVPYGTVLEKLEESAVEAGETIANW
DPHTHPIITEVAGNIKFVDMIDGVTMTRQTDELTGLSSIVVLDVGQRTSAGKELRPMIRL
VDDNGNDLMIPGTDVPAQYFLPGNAIVNLDDNAKISVGDALARIPQESSKTRDITGGLPR
VADLFEARKPKEPAILAEISGTISFGKETKGKRRLVITPSDGGDAYEEMIPKWRNLNVFE
GEKVERGEVIADGPEAAHDILRLRGIHSVANYIVNEVQDVYRLQGVKINDKHIEVIIRQM
LRKCIITEAGDSEFLEGEQLEVSRVKIANRELEAQGKRPAKFERDLLGITKASLATESFI
SAASFQETTRVLTEAAVGGKSDNLRGLKENVIVGRLIPAGTGYAYHKNRNQARAKGEVVE
AQTVSASEAEQNLADLLNLAGSQE
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaacagcaaagcaagactgaagaatttaacggcatc
aagattggtctggcctcgcccgacctgatccgttcttggtcattcggcgaagtaaagaag
ccagaaaccattaactaccgtaccttcaagcctgagcgcgaaggtctgttctgcgcccgt
atctttggccccgtcaaggattacgagtgtttgtgcggtaagtacaagcgtctcaagcac
cgtggtgtgatctgtgagaagtgtggcgttgaagtaacccagaccaaggtgcgtcgtgag
cgcatgggtcacatcgaactggccagcccagttgcccacatctggttcttgaaatcgctg
ccgtcccgtatcggtctgatgctggatatgaccctgcgtgatatcgagcgcgtgctgtat
ttcgaatctttcgtggtaatcgagcctggcatgaccagcctcgagcgcggtcagatgctg
accgaagaaacctacctcgacgccctcgaagagtacggcgatgagttcgaagccaagatg
ggtgccgaagcggttctggaactgctgcgtgccatcgatctggccaaagaaatcgagcag
atgcgcgaagagctgccatccatcaactcagagacccgtcgcaagaaagtgaccaagcgt
ctgaagctgatggaagccttctacacctccggcaacaagcctgagtggatgatcctgaaa
gtgctgcctgtgctgccaccggacctgcgtcctctggtaccgctggacggcggccgtttc
gcgacttccgatctgaacgatctgtatcgccgcgtgatcaaccgtaacaaccgtctgaag
cgtctgctggatctggctgcgcctgacattatcgtacgcaacgaaaagcgtatgctgcag
gaatctgtagatgcgctgctggataacggtcgtcgcggccgtgccattaccggttccaac
aagcgtcctctgaagtccctggccgacatgatcaagggtaagcaaggtcgtttccgtcag
aacctgctcggtaagcgtgttgactactcaggccgttcggtaattaccgtaggtcctacc
ctgcgtctgcatcagtgcggtctgccaaagaaaatggcactggaactgttcaagcccttc
atctatggcaagctggaaggtcgtggtctggccaccaccatcaaagccgccaagaagatg
gtcgagcgcgaagttgccgaggtttgggacgtactggatgaagttatccgcgaacatccc
gtgatgctcaaccgtgcaccaacactgcaccgtctgggtattcaggcgttcgaacctgta
ctgatcgaaggtaaggcaatccaactgcacccactggtgtgtgcggcctataacgccgac
ttcgacggtgaccagatggcggtacacgtacccctgaccctggaagcccagttggaagca
cgtgcgctgatgatgtctaccaacaacatcctgtcgcccgccaacggtgagccaatcatc
gttccttctcaggacgtggtattgggtctgtactacaccagccgtgagcgtgtaaacggt
cgcggtgaaggcatggccttcgaatctgttgccgaagccgagaaagcttatcgcactggt
gctgccgaactgcacgcccgtgtgaaagtacgtatcactgaaacccaaatcgctgacaac
ggcgagcgtacccaggtgcgtcgtatcgtcgacaccacagtgggccgtgcgctgctgtca
caaatcctgcctgccggtctgtcattcgacctggtgaaccaggatatgggcaagaagcag
atctccaagctgctgaacacctgttaccgtcagctgggtctgaaagataccgttatcttc
gccgaccaactgatgtacaccggtttccatttcgccaccatctccggtgcctctgtgggt
atcaacgacatggtgatcccggatgagaagtacaccctggtggccgaggccgaagccgaa
gtgctggaaatccaggaacagttccagtctggtctggtaactgccggtgagcgctataac
aaggtgatcgacatctgggcaagcgccaacgaaaaagtgtccaaggcgatgatggaaaac
ctgtccaccgagacagtcatcaaccgtcagggtgaagaagagaagcagaagtcgttcaac
agcatctacatgatggccgactcaggcgctcgtggtagtgccgcccagatccgtcagctg
gcgggtatgcgtggtctgatggccaagccagacggctcgatcatcgaaacacccatcgtg
gctaacttccgcgaaggtctgaacgtactgcagtactttatttctacccacggtgcccgt
aagggtctggcggatacggcactgaagacagcgaactcaggttacctgactcgtcgtctg
gtggacgtggcccaggatctggtggttatcgaggaagactgtggcaccttcgaaggtctg
accatgaagccgctgatcgaaggtggtgacgttgttgagccgctgcgtgagcgcgtgctg
ggccgtgtggttgccgaagacgtgttcttccctggcaccgaagacgtgctggcacctcgc
aacaccctgctggacgaagcctggtgtgacaagcttgaacaacacagtgttgacgaagtg
atagtgcgctccgtaatcacctgcgataccgatttcggtgtgtgtgctgcctgttacggc
cgtgacctggcccgtggtcacctgattaaccacggtgaggccattggtgtggttgctgcc
cagtcaatcggtgaaccaggtacacagctgacgatgcgtaccttccacatcggtggtgcg
gcatccagggcttctgcagaaaacagcgtacaggttaagaacgccggtaccctgaagctg
cacaatgccaagcatgttaccaacagcgacggcaagctggtgatcgtgtcccgttcttct
gaactggccatcatcgatgagctgggtcgtgagaaagagcgctacaaggtgccttacggt
accgtgttggagaagttggaagagtctgctgttgaagccggcgaaaccatcgccaactgg
gatccgcacactcacccaatcatcaccgaagtggccggtaacattaagttcgtcgacatg
atcgatggcgtgaccatgacccgtcaaaccgacgagctcaccggtctgtcttccatcgtg
gtactggacgtgggtcaacgtacctccgccggtaaagaactgcgtccgatgatccgtctg
gttgacgataacggcaatgacctgatgatccctggcaccgacgttcctgcgcagtacttc
ctgcccggtaacgcgattgtgaacctggacgacaacgccaagatcagcgtgggtgacgca
cttgctcgtattcctcaggaatcgtccaagacccgcgacatcaccggtggtctgccacgg
gttgctgacctcttcgaagcgcgtaagccgaaagagcctgcaatcctggccgaaatcagc
ggtaccatctccttcggtaaagagaccaagggtaagcgccgtctggttattaccccgagc
gacggtggcgatgcctatgaggaaatgattccaaagtggcgtaacctgaacgtgttcgaa
ggtgaaaaggttgagcgcggtgaagtgatcgccgacggtccggaagcggcccatgacatt
ctgcgtctgcgtggtatccacagtgtggccaactacatagtcaacgaagttcaggacgtt
taccgtctgcagggtgtgaagatcaacgataagcatatcgaagtgatcatccgccagatg
ctgcgtaagtgcatcatcactgaagccggcgattccgagttcctcgaaggtgagcagctg
gaagtgtcccgcgtcaagatcgccaaccgtgaactggaagctcagggcaaacgtcctgcc
aagttcgaacgcgatctgctgggtatcaccaaggcgtctctggcgaccgagtccttcatc
tctgcggcctcgttccaggagaccactcgcgttctgaccgaagcagccgttggcggcaag
tccgacaacctgcgtggtctgaaagagaacgtgatcgtgggtcgtctgatcccggccggt
accggttatgcctaccacaagaaccgcaaccaggctcgcgccaagggcgaggtggttgag
gcgcaaaccgtgagtgccagcgaagccgagcaaaacctggctgatctgctgaatctggca
ggcagccaagagtaa
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