Shewanella sedimentimangrovi: JYB85_01200
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Entry
JYB85_01200 CDS
T07846
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
ssem
Shewanella sedimentimangrovi
Pathway
ssem03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ssem00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JYB85_01200 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssem03021
]
JYB85_01200 (rpoA)
03400 DNA repair and recombination proteins [BR:
ssem03400
]
JYB85_01200 (rpoA)
Enzymes [BR:
ssem01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JYB85_01200 (rpoA)
Transcription machinery [BR:
ssem03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JYB85_01200 (rpoA)
DNA repair and recombination proteins [BR:
ssem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JYB85_01200 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
QSX37499
LinkDB
All DBs
Position
260166..261155
Genome browser
AA seq
329 aa
AA seq
DB search
MQGSVTEFLKPRLVDIEQVNPTRAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSSKEGVQEDILEILLNLKGLAVIIEGKDEAMLTLSKSGAGPVTAADITHDGD
VTIVNPDHVICHLTGNNEISMRIRVERGRGYVPASARAQTEDDDRPIGRLLVDASFSPVA
RIAYNVEAARVEQRTDLDKLVIDMTTNGTIDPEEAIRRSATILAEQLDAFVELRDVSEPE
QKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLT
EIKDVLASRGLSLGMRLENWPPASLADDL
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgcagggttctgttacagaatttcttaaaccgcgtctcgtggatatcgagcaggttaac
ccaactcgtgccaaggtgactctggagccgctcgagcgtggtttcggacatactttgggt
aacgcgttgcgtcgcatccttctgtcgtctatgcccggctgcgcggttaccgaagtcgag
atcgacggtgtgctgcatgaatacagcagcaaggaaggcgtacaagaagatatccttgaa
atcttgctgaacctgaaaggtctggcagtgatcatcgagggtaaagacgaggctatgctc
actctgagcaagtccggcgcaggccctgtcactgcagcagacatcacccacgacggtgat
gtaactatcgtcaaccctgaccatgttatctgtcatttgaccggtaacaatgagatcagc
atgcgtatccgcgttgagcgtggtcgtggttatgtgccggcttctgcccgtgcccagacc
gaagacgatgatcgcccaatcggccgtttgctggttgacgcttccttctcgcccgttgcc
cgcattgcctacaacgtagaagcagcgcgtgtggaacagcgtactgacctggataagctg
gtaatcgatatgaccactaacggtactatcgatccggaagaagctatccgtcgttccgca
accatcctggccgaacagctggatgcgtttgtagagctgcgtgatgtttctgagccagag
cagaaagaagagaagccagagttcgatccaattctgctgcgtcctgtcgacgatttagag
ctaactgtacgttcggccaactgtctgaaggccgaagcgattcattacatcggagatctg
gtacaacgcactgaagttgagttgctcaagacacctaacctgggtaagaagtctcttacc
gagatcaaggatgtgttggcttctcgcggactgtcgctaggtatgcgtctggaaaactgg
cctccagccagcttggccgacgacctgtaa
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