Shewanella sedimentimangrovi: JYB85_01330
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Entry
JYB85_01330 CDS
T07846
Name
(GenBank) AMP-binding protein
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
ssem
Shewanella sedimentimangrovi
Pathway
ssem00061
Fatty acid biosynthesis
ssem00071
Fatty acid degradation
ssem01100
Metabolic pathways
ssem01212
Fatty acid metabolism
ssem02024
Quorum sensing
ssem04146
Peroxisome
Module
ssem_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
ssem00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
JYB85_01330
00071 Fatty acid degradation
JYB85_01330
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
JYB85_01330
09145 Cellular community - prokaryotes
02024 Quorum sensing
JYB85_01330
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
ssem01004
]
JYB85_01330
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ssem04147
]
JYB85_01330
Enzymes [BR:
ssem01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
JYB85_01330
Lipid biosynthesis proteins [BR:
ssem01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
JYB85_01330
Exosome [BR:
ssem04147
]
Exosomal proteins
Exosomal proteins of breast milk
JYB85_01330
Exosomal proteins of breast cancer cells
JYB85_01330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
Motif
Other DBs
NCBI-ProteinID:
QSX37518
LinkDB
All DBs
Position
complement(288544..290199)
Genome browser
AA seq
551 aa
AA seq
DB search
METQNKTPIEMLTHWVETRGDEVYLRQPINGQYRDFSWRQVQQQMQQLAGGLRHLGLVPG
DKIAVLSKNCAEWFISDLALMYGGYISVPIYPTANADTIRYVLEHSGAKAIIIGKLDHWA
EQEAGLGGSILRLAMPYDTMPTQYGWQQLLTMGQPLQEAPLPKLDDTMTLIYTSGSTGKP
KGAIQTFGSYAWTCSAVVRDLKTSGEDRLLSYLPLAHITERVAIEGSSFYSGSPVAFVEN
LDTFVADVQRMRPTVFFSVPRLWTLFQKNIIDKIGYNKLQLLLKIPLIGYLVKRKIHKGL
GLDQCRLLGSGSAPIPASLIQWYHSIGLDICEAWGMTENSAYSIINYPFDAKKIGTVGKP
IVGCDVRRGEDGELLVKSPGLMSGYYLQPEATEAAFDGDGFFHTGDLCTIDEDGCISITG
RVKDNFKTSKGKYVAPVPIERKLAQDPHIELICVIGSGLPHPIALVQLSEGAKLQPREEV
RVSIKATLDAINPNLESHETVDAVVVVTDPWTIENDVLTPTLKIKRHVLEARFSAKVNGV
RGAKVVWEEEI
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atggaaacccaaaacaagaccccgatagaaatgttgacccattgggtggagacccggggc
gacgaagtctacttacgccaacccattaacggtcaataccgggatttcagctggcgtcag
gtgcagcagcaaatgcagcaattggccggaggtttgcgtcatcttggtctggtgccgggt
gacaagattgccgtgctgtcaaagaactgcgccgagtggtttatcagcgatctggccttg
atgtacggcggttacatcagcgtgcccatctaccccactgccaatgccgataccattcgt
tatgtactggagcacagtggtgccaaggccatcatcataggcaagctggatcactgggcc
gagcaggaagccggtctcggcggcagcattttgcgtctggccatgccctacgacaccatg
ccgacccagtatggctggcaacagctgctgaccatgggccaacccctgcaggaagccccc
ctgccgaagctggatgacaccatgaccctgatctacacctcagggtcaacgggtaaaccc
aagggcgccatccagacctttggcagttatgcctggacctgcagcgccgtggtgcgcgat
ctcaagaccagtggcgaagaccgtctcttgtcttacctgccgctggcacacatcactgag
cgggtggcgattgagggctcttctttctactccggcagtccggtcgcctttgtcgagaac
ctggacacctttgtcgccgatgtgcagcgcatgcgccccacggtatttttctcggtaccc
cgtttatggaccctgttccagaagaacattatcgacaagattggctacaacaagctgcag
ttgctgctgaagatccccctcatcggttatctggttaagcgcaagatccacaagggactg
ggcctcgaccaatgccgtttgctgggctcgggctcggcgcccataccggcatcgcttatc
cagtggtatcacagcataggtctggacatatgtgaggcctggggcatgacggaaaacagt
gcctattcgatcatcaattatcccttcgatgccaaaaagataggcacggttggcaagccc
atagtcggctgcgatgtgcgccgcggcgaggatggcgaactgctggtgaagagtccggga
ctgatgagcggttactacctgcaacccgaggccacagaggccgccttcgatggcgatggt
ttcttccataccggtgacctgtgcaccatagatgaagatggctgtatcagcattacgggc
cgggtgaaggacaacttcaaaacctcgaaaggtaagtatgtggctccggtgcccattgag
cgcaagctggcccaggatccccatatagaacttatctgcgtcataggttccggcctgcca
caccccatagccctggtgcaattgtccgagggtgccaagttgcagccaagggaagaagtg
cgggtgtccatcaaggcaaccctggatgccatcaaccccaatctggaatcccatgaaacc
gtggatgccgtggtggtggtgacggatccctggaccatagaaaacgatgtgctgactcca
acactgaagatcaaacgtcatgtgctggaagcgcgtttcagcgccaaggtgaacggggtc
cgtggtgccaaggtggtgtgggaagaggaaatctaa
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