Shewanella sedimentimangrovi: JYB85_02090
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Entry
JYB85_02090 CDS
T07846
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ssem
Shewanella sedimentimangrovi
Pathway
ssem03420
Nucleotide excision repair
ssem03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JYB85_02090 (uvrD)
03430 Mismatch repair
JYB85_02090 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssem03400
]
JYB85_02090 (uvrD)
Enzymes [BR:
ssem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JYB85_02090 (uvrD)
DNA repair and recombination proteins [BR:
ssem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JYB85_02090 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
JYB85_02090 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
DEAD
ResIII
Motif
Other DBs
NCBI-ProteinID:
QSX37651
LinkDB
All DBs
Position
498876..501041
Genome browser
AA seq
721 aa
AA seq
DB search
MDVSSLLDGLNDKQREAVAAPLSSMLVLAGAGSGKTRVLTHRIAWLMQVENQSPYSILAV
TFTNKAAAEMRERVEKIVGNHMGRMWIGTFHGLAHRLLRTHWQDANLPQNFQIMDSDDQQ
RLIKRILKSMNLDEKQYPPRLVAGYINGKKDQGLRPQHIDAGAFPMEQMLLNLYRVYQDS
CDRAGLVDFAEILLRAHELWLNKPHLLAHYQDRFRHILVDEFQDTNAIQYAWIRVLAGNS
ANVMIVGDDDQSIYGWRGAQVENLHRFLKDFPGASTIRLEQNYRSSGNILKASNELIANN
PERMGKELWTEDKDGEPISLYCAFNEMDEARFIVGSIGDWQDKGGALSECAILYRSNAQS
RVLEEALLHKGLPYRIYGGLRFFERQEIKDAMGYLRLIANHDDDAAFERVVNTPPRGIGD
RTLDILRTTARQQQLTLWQTCQRLLEEKVLAGRAANAVRGFMDLIIQLGNDTTEQPLYRM
ADWVILHSGLKAMYEEEKGEKAHARVENLEELVTAARSFEMPEELEDMGELNAFLSHAAL
EAGEGQADAHTDAVQLMTLHSAKGLEFPVVFMAGVEEGIFPSKLALEEGDRLDEERRLCY
VGMTRAMEKLYITYAESRRIYGREDYARPSRFIKEIPPQYVQEIRLKAQVSTPLANNRFA
HAQQAFDDSGFRLGQRVMHPKFGEGAVTNYEGSGPQARVQVNFDDVGSKWLVVAYARLET
A
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggacgtatcttctttactggatggcctgaatgataaacagcgcgaggcggtggcggcg
ccattgtcgagcatgctggtgctggcgggtgccggcagtggcaagacccgggtgctgacc
cacaggatcgcctggctgatgcaggtggaaaaccagagcccctattccattttggccgtg
acctttaccaacaaggccgccgccgagatgcgtgagcgggtggagaagatagtcggcaat
cacatgggccgcatgtggattggtaccttccacggcctggcacacaggctgctgcgcacc
cattggcaggacgccaatctgccacagaatttccagatcatggactcggacgatcagcag
cgactgatcaaacgcatcctcaagagcatgaacctggacgagaaacagtatccaccgcgg
ctggtggccggttacatcaacggcaagaaagatcagggcctgcggccccagcacatagac
gccggtgccttccccatggagcagatgctgctcaacctgtaccgtgtgtatcaggacagc
tgcgaccgcgccgggctggtggactttgccgagatactgctgcgagcccacgagctgtgg
ctaaacaagccacacctgttggcccattaccaggacaggttccgccatattctggtggac
gaattccaggataccaacgccatccaatacgcctggatccgggtgctggctggcaacagc
gccaacgtgatgatagtgggcgatgacgatcagtccatctacggctggcgtggcgcccag
gtggaaaacctgcatcgcttcctcaaggatttccccggcgccagcaccatacgcctggag
cagaattaccgctccagcggcaacatcctcaaggcttccaacgagctgatcgccaacaac
cccgagcgcatgggcaaggagctgtggaccgaggacaaggatggtgagcccatctccctc
tactgcgccttcaacgaaatggacgaggcccgctttatcgttggtagcatcggcgactgg
caggacaagggcggcgccctgtccgagtgcgccatactgtaccgctccaacgcccagtcg
cgggtactggaagaagccttgctgcacaagggcctgccgtaccgcatctatggtggcctg
cgcttcttcgagcgtcaggagatcaaggacgccatgggctacctgaggctgattgccaac
cacgatgacgatgccgccttcgagcgggtggtgaataccccgccgcggggcataggcgat
cgcaccctggacattttgcgcaccacggcaaggcagcagcagctgaccctgtggcagacc
tgccagcgactgctggaggaaaaggtgctggccgggcgcgccgccaacgcggtgcggggc
tttatggatctgataatccagctcggcaacgatacgaccgagcagcctctgtaccgcatg
gccgactgggttattttgcactcgggtctcaaggccatgtacgaggaagagaagggcgaa
aaggcccatgccagggtcgaaaacctggaggaactggtcaccgccgcccgcagcttcgaa
atgccggaggagctggaggacatgggcgagctcaatgccttcctgtcccacgcggcgctg
gaggccggtgaaggtcaagccgatgcccacaccgatgcggtgcagctgatgacgctgcac
tcggccaagggcctggagttcccggtggtgtttatggccggtgtggaagagggcatattc
cccagcaagctggcgctggaggagggtgacaggctcgatgaggagcgtcgcctgtgctac
gtgggcatgacccgcgccatggaaaaactctatatcacctatgccgagtcgcgccgcatc
tatggccgcgaggattacgccagaccctcacgatttatcaaggaaattccgccgcaatat
gtgcaggaaatccgcctcaaggcccaggtgtcgaccccgctggcgaacaaccgcttcgcc
catgcccagcaggcctttgacgactccggctttcgtttgggacaaagggtcatgcatccc
aagttcggcgagggcgccgtcaccaactacgaaggcagcggtccccaggcgcgggtgcag
gtcaatttcgacgatgtcggcagcaagtggctggtggtagcctacgccaggctggaaacc
gcctaa
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