Shewanella sedimentimangrovi: JYB85_02125
Help
Entry
JYB85_02125 CDS
T07846
Symbol
ubiD
Name
(GenBank) 4-hydroxy-3-polyprenylbenzoate decarboxylase
KO
K03182
4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:
4.1.1.98
]
Organism
ssem
Shewanella sedimentimangrovi
Pathway
ssem00130
Ubiquinone and other terpenoid-quinone biosynthesis
ssem01100
Metabolic pathways
ssem01110
Biosynthesis of secondary metabolites
ssem01240
Biosynthesis of cofactors
Module
ssem_M00117
Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol
ssem_M00989
Ubiquinone biosynthesis, O2-independent, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol
Brite
KEGG Orthology (KO) [BR:
ssem00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00130 Ubiquinone and other terpenoid-quinone biosynthesis
JYB85_02125 (ubiD)
Enzymes [BR:
ssem01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.98 4-hydroxy-3-polyprenylbenzoate decarboxylase
JYB85_02125 (ubiD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UbiD
UbiD_C
UbiD_N
Motif
Other DBs
NCBI-ProteinID:
QSX37658
LinkDB
All DBs
Position
complement(507516..508997)
Genome browser
AA seq
493 aa
AA seq
DB search
MSFKDLRSFIAHLEANGELKRVSYPVDPHLEMTEICDRVLRAGGPALLFEQPKGHSMPVL
ANLFGTPKRVAMALGKEDPLALREVGELLAFLKEPEPPRGFKDALSKLPLFKQALNMPAK
TVSKAPCQEVILTGEEVDLTKLPIQHCWPGDVAPLMTWGLTITKGPRQKRQNLGIYRQQL
LGKNKLIMRWLSHRGGALDFKDFQEQHPGENYPVVVALGSDPVTILGAVTPVPDSMSEYA
FAGLLRGERTEVVKALSCDLEVPATSEIILEGYIAPGEMAEEGPYGDHTGYYNETDSFPV
FTVTHISHRKDAIYHSTYTGRPPDEPAMLGVALNEVFVPILRKQYPEIVDFYLPPEGCSY
RMAVISIRKQYPGHAKRVMMGAWSFLRQFMYTKFIVVVDDDVNCRDWQDVIWAITTRMDP
IRDTLMVDNTPIDYLDFASPVAGLGSKMGLDATNKWPGETQREWGTPIVMDPQVKQKVDE
IWDQLGIDDSPTL
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atgagttttaaggatttacgcagcttcatcgcgcacctggaagcgaacggtgagttgaag
cgcgtcagctatccggtggatcctcatctcgaaatgaccgagatttgcgaccgggtgctg
cgtgccggcggcccggcgctgctgtttgaacagcccaagggccacagtatgcctgtgttg
gccaacctgttcggcacccccaaacgggtcgccatggccctgggcaaggaagatccgctg
gcgctaagggaagtgggtgagctgctggcctttttgaaagagcccgagccgccacggggc
ttcaaggatgccctgtccaaactgccgctgttcaagcaggcactcaatatgccggccaaa
accgtcagcaaggctccctgtcaggaagtgatcctgactggcgaagaggtggatctgacc
aagctgcccatccagcattgctggcccggcgatgtggcccccctgatgacctggggtctg
accatcaccaagggcccccggcagaaacgccagaatctggggatctaccgccagcagcta
ctgggcaagaacaagctcatcatgcgctggctgtcacaccgtggcggcgccctcgacttc
aaggatttccaggaacagcacccaggtgaaaactaccctgtggtggtggccttgggcagc
gatccggtcaccatactcggcgccgtcactccggtgccggacagcatgagcgaatatgcc
tttgccggactgctgcggggcgagcgcaccgaagtggtcaaggccctctcctgcgatctg
gaagtgccggccaccagcgagattatcctcgagggctacatagcccccggcgagatggcc
gaggaaggtccctacggcgatcacaccggctactacaacgagaccgacagtttccccgtg
tttaccgtgacccacatcagtcacaggaaagacgccatttaccacagcacctacaccggg
cggccaccggatgagcccgccatgctgggggtggcgctgaacgaggtatttgtaccgata
ctgcgtaagcagtaccctgaaatcgttgatttttacctgccacccgagggttgttcctac
cggatggcggtgatctccatccgcaaacagtacccgggccacgccaagcgggtgatgatg
ggcgcctggtccttcctgcgccagtttatgtacaccaagtttatcgtggtggtggatgat
gacgtcaattgccgggactggcaggacgtgatctgggccatcaccacccgtatggatccc
atccgtgacaccctgatggtggacaacacccccatagactatctggacttcgcctcgccg
gttgcgggcctgggctccaagatgggcctggatgccaccaacaagtggccgggagaaacc
cagcgcgaatggggtacgccaatagtcatggatccccaagttaaacaaaaggttgacgag
atctgggaccaattgggcatagacgacagccctaccctataa
DBGET
integrated database retrieval system
