Shewanella sedimentimangrovi: JYB85_03050
Help
Entry
JYB85_03050 CDS
T07846
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ssem
Shewanella sedimentimangrovi
Pathway
ssem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JYB85_03050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssem03019
]
JYB85_03050
03009 Ribosome biogenesis [BR:
ssem03009
]
JYB85_03050
Enzymes [BR:
ssem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JYB85_03050
Messenger RNA biogenesis [BR:
ssem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JYB85_03050
Ribosome biogenesis [BR:
ssem03009
]
Prokaryotic type
rRNA helicases
JYB85_03050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UTP25_NTPase-like
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QSX37835
UniProt:
A0ABX7R4U3
LinkDB
All DBs
Position
complement(744582..746477)
Genome browser
AA seq
631 aa
AA seq
DB search
MSFSEKTFRELGLSEALLRALDELGYENPTPIQAASITPLMAGQDILGQAQTGTGKTGAF
ALPLLSNIDAGLNAPQILVLAPTRELAVQVAEAFSSYAKFMKGFHVLPIYGGQSMHQQLQ
ALRRGPQVIVGTPGRVMDHMRRGTLKLDTLKALVLDEADEMLKMGFIDDIEWILEHTPES
RQLALFSATMPEQIKRVANKHLQNPVNISIAASHTTVDSIEQRFVQVSQHNKLEALVRVL
EVENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKSGKLDIII
ATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTI
ERATNSRISPMKIPSPETVAERRLSRLGEQVGEVIANEHLDFMKGAVAQLCQQLEVDTDV
LAAALLQLVQQERPLQLPAIQERQRDSHDERSGRGDRAERGERFERGERRRDSRPLPANL
GSAEALKDNPDIKMNRYVIDVGREHGVGVGNIVGAIANEANIDSRYIGQIQLYDQQTTVD
LPDGMPKDILVHLKKVRVCGKPLNIREVGAEGGEDFSRGGPVPKRPRKPQGERFAERGER
SDRGERPDRGERKFSDRKAPSDRKPRRSKEG
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgtcattcagtgaaaaaaccttccgcgaactcggcctttccgaggcgcttttgcgcgcc
ctcgacgaactcggctacgagaaccctaccccaattcaggccgcgagtatcacgcccctg
atggccggtcaggacatactcggccaggcccagacgggtaccggcaagaccggcgccttc
gccctgccgctgctgtccaacatagatgccggcctcaacgcgccgcaaatcctggtgctg
gcaccgacccgcgaactggcggtacaggtggccgaggccttctccagctacgccaagttc
atgaagggcttccacgtgctgcccatctacggcggccaaagcatgcaccaacagctgcag
gccctgcgccgcggtcctcaggtgatagtcggtactccgggccgtgttatggaccatatg
cgtcgtggcaccctcaagctcgacaccctgaaagccctggtgctggacgaagccgatgaa
atgctgaaaatgggcttcatcgacgatatcgaatggatcctggaacacactccggaaagc
cgtcagctggcgctgttctccgccaccatgcctgagcaaatcaagcgcgtggccaacaag
catctgcaaaacccggtcaatatcagcatcgccgccagccacaccacggtggactccatc
gaacagcgttttgtgcaggtatcccagcacaacaaactggaagccctggttcgggtgctg
gaagtggaaaacaccgaaggtatcattatcttcgttcgtacccgtaattcctgcgttgaa
ctggctgaaaagctggaagcccgtggttatgcctcctcgcccctgcacggtgacatgaac
cagcaggcccgtgagcgcgccgtggatcagctcaagtccggcaagctggacatcattatc
gccaccgacgtggccgcccgtggtctggacgttgagcgtatcggtcacgtggttaactac
gatattccttacgatacagaagcctacgtgcatcgtatcggtcgtaccggccgcgcaggt
cgtaccggtatggcaatcctgttcgtgacccatcgtgaaatgcgcatgctgcgcaccatt
gagcgcgccaccaacagccgtatttcgccaatgaagatcccaagccccgagacagtggcc
gagcgccgcctgtcccgtctgggtgagcaagtgggtgaagtcatcgccaacgaacacctg
gactttatgaagggtgccgtggctcagctgtgccaacagctggaagtggacacggacgta
ctggccgccgccctgctgcagctggtacaacaggaacgtccgctgcaactgcccgccatc
caggagcgtcagcgtgacagccatgatgagcgcagcggccgcggtgatcgtgccgagcgt
ggtgagcgcttcgagcgtggcgaacgtcgtcgtgactcgcgccccctgcccgccaacctg
ggcagcgccgaggcactgaaggacaatcccgacatcaagatgaaccgctacgtcatcgac
gtgggtcgtgagcacggtgtgggtgtgggcaatatcgtcggcgccatcgccaacgaagcc
aacatcgacagccgctacattggccagatccaactgtacgatcagcaaaccacggtcgac
ctgcccgacggcatgcccaaggacatactggttcacctgaagaaggtgcgcgtctgtggt
aagccgctgaacatccgcgaagtgggcgccgaaggcggcgaagacttcagccgcggcggc
ccggtgcccaagcgtccgcgcaagccccagggcgagcgttttgctgagcgcggtgagcgt
tctgaccgcggcgaacgcccggatcgtggtgaaagaaagttcagcgaccgcaaggcgcca
tccgatcgcaaaccacgccgttcgaaagaaggctga
DBGET
integrated database retrieval system
