Shewanella sedimentimangrovi: JYB85_03360
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Entry
JYB85_03360 CDS
T07846
Symbol
ung
Name
(GenBank) uracil-DNA glycosylase
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
ssem
Shewanella sedimentimangrovi
Pathway
ssem03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ssem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JYB85_03360 (ung)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssem03400
]
JYB85_03360 (ung)
Enzymes [BR:
ssem01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
JYB85_03360 (ung)
DNA repair and recombination proteins [BR:
ssem03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
JYB85_03360 (ung)
Prokaryotic type
JYB85_03360 (ung)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
QSX37893
LinkDB
All DBs
Position
826543..827223
Genome browser
AA seq
226 aa
AA seq
DB search
MALIQDWDALLAEETSKPYFQQLSAFVDAERASGKQIYPPHDEVFSAFRHTPLDKVRVVL
LGQDPYHGEGQAHGLCFSVKPGIKPPPSLVNMYKELASDIPGFEIPSHGFLQSWAEQGIL
MLNTVLTVEQGKAHSHAKAGWETFTTNVLKALNARKEPIIFVLWGSHAIKKGKVIDAPWH
RIISGPHPSPLSAYRGFFGCRHFSLINSMLQEQGHSPIHWQPRAQK
NT seq
681 nt
NT seq
+upstream
nt +downstream
nt
atggcccttattcaggattgggacgccttgttggcggaagaaacttccaagccctatttt
cagcagctgagcgcattcgttgatgccgagcgcgccagtggcaagcaaatttatccgccc
cacgatgaggtgttcagtgctttcaggcatacgcccctggataaggtgcgggtggtgctc
ctggggcaggacccctatcacggcgaaggtcaggcccatgggctgtgtttctcggttaag
ccgggcatcaagcctccgccgtcactggtcaatatgtacaaggagttggccagtgatatt
ccgggctttgagatcccgagtcacggctttctgcaatcctgggccgagcaggggatattg
atgctcaataccgtgttgacggtggaacagggaaaggcgcactcccatgccaaggcgggt
tgggaaaccttcaccaccaatgtgcttaaggccctcaatgccaggaaagagcccattatt
ttcgtgctttggggcagccatgccatcaagaagggtaaggtgatagatgcgccctggcac
aggatcatttccggcccccatccctcgcccctgtctgcttatcggggctttttcggctgt
cgccacttctcattgatcaacagtatgttgcaggagcagggccacagtcccatccactgg
caaccccgagcacaaaaataa
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integrated database retrieval system
