Shewanella sedimentimangrovi: JYB85_03470
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Entry
JYB85_03470 CDS
T07846
Symbol
dbpA
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
ssem
Shewanella sedimentimangrovi
Brite
KEGG Orthology (KO) [BR:
ssem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ssem03009
]
JYB85_03470 (dbpA)
Enzymes [BR:
ssem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
JYB85_03470 (dbpA)
Ribosome biogenesis [BR:
ssem03009
]
Prokaryotic type
rRNA helicases
JYB85_03470 (dbpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
Helicase_C_2
DIP2311-like_C
AAA_19
CMS1
Motif
Other DBs
NCBI-ProteinID:
QSX37914
LinkDB
All DBs
Position
847777..849189
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AA seq
470 aa
AA seq
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MKDIPLSQQQSQAFSTLALKPALLENLGTLGFQAMTEIQAQSLPAILAGTDVIGQAKTGS
GKTAAFGLGLLHHLEVKRFRIQSLVLCPTRELAEQVAQDIRLLARGIHNIKVLTLCGGVP
MGPQVGSLEHGAHIIVGTPGRVLDHLERGRLDLSHLNMLVLDEADRMLEMGFADALDNII
AHTPANRQTLLFSATFPEQIQAIAARIMRSPLMVKVNATHDSVSISQHFFELDKHGSRMQ
ALKLLLLEHQPGSAVVFCNTKRETQMVADELADNGFSVLALHGDMEQKDREQTLLRFANG
SACVLVATDVAARGLDIEALDAVFNFHLAHDTEVHIHRIGRTGRAGSQGAAYSFYSHQDG
MKLALLEDYLGHAIVAESLPSLAALDKQPRQAAMVTLQIDGGKKQKLRPGDILGALTAGD
DGLAGTEVGKIQMGDIRAFVAVSRGAANRALKQLQKGKIKGRSYRAWLLN
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
gtgaaggatatccccttgagccaacaacagtcacaggccttttccaccttggcccttaaa
cctgccctgcttgaaaacctcggcacccttgggttccaggccatgaccgagatccaggcc
cagagtctgccggccatcctggccggaacagatgtgataggccaggccaagacgggctcg
ggcaagaccgcggcctttggtctgggattgctgcatcaccttgaggtgaaacgcttccgc
attcagagcctggtgctgtgtccaacccgggagctggcagagcaggtggcccaggacata
cggctgttggcccgcggcatccacaatatcaaggtgttgaccctgtgtggtggtgttccc
atgggcccccaggtgggctccctggagcacggcgcccatattatagtcggcactccgggc
cgggtactcgatcacctggagcgaggtcgcctggatttgagccatctcaatatgctggtg
cttgatgaggccgatcgcatgctggaaatgggctttgccgatgcgctcgacaatatcatc
gcccacaccccggccaaccggcagaccctgttgttcagcgccacctttccggagcagatc
caggccattgccgcccgtatcatgcgctcgccgctgatggtcaaggttaacgctacccat
gacagcgtcagcatcagccagcacttctttgagctggataagcatggcagccggatgcag
gcgctgaaactcctgctgctggaacaccagcccggcagtgccgtggtgttttgtaacacc
aagcgtgaaacccagatggtggccgatgagctcgccgacaatggcttcagcgtgctggca
ctgcacggcgatatggaacagaaagacagggaacagacgctgctgcgctttgccaacggc
agcgcctgtgtgttggtggccacagatgtggcggcccggggcctggatatcgaggctctg
gatgctgtgtttaacttccatctggcccatgacaccgaggtgcacattcaccgcatcggt
cgtaccggccgggccggcagtcagggggcagcctacagtttttacagtcatcaggacggc
atgaaactggccttgctggaagactacctgggtcatgccatagtggccgaaagtctgcca
tcactggcggcgctggacaagcaaccgcgccaggcggccatggtgaccttgcagattgac
ggcggcaagaaacagaagctgcgtccaggtgacatactgggcgccctgaccgccggcgat
gatggccttgccggcaccgaggtgggcaagattcagatgggtgatatccgcgcctttgtg
gccgtgagccgtggcgccgccaaccgggcccttaagcagctgcaaaagggcaagatcaag
ggccgcagctatcgcgcctggttgctgaactaa
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