Shewanella sedimentimangrovi: JYB85_03745
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Entry
JYB85_03745 CDS
T07846
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ssem
Shewanella sedimentimangrovi
Pathway
ssem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JYB85_03745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssem03019
]
JYB85_03745
Enzymes [BR:
ssem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JYB85_03745
Messenger RNA biogenesis [BR:
ssem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JYB85_03745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QSX37965
LinkDB
All DBs
Position
complement(902233..903792)
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AA seq
519 aa
AA seq
DB search
MSFASLGLSAPILKALSQKGYQTPSPIQAQAIPVVLKGGDLLAAAQTGTGKTAGFTLPLL
ENLSKGQKAGPKQVRALVLTPTRELAAQIADNVTAYSKYLPLKSTVVFGGVSINPQISAL
ARGVDILVATPGRLLDLYQQHALSFHGLEVLVLDEADRMLDMGFIHDIKRILKLLPPKRQ
NLLFSATFSEEIRTLAHGLLHNAAEVSVTPRNSTAERVRQWICPVDKNQKPALLAELTRF
YRWEQVLVFCRTKHGANRLAKQMEAEGIKAAAIHGNKSQSARTKALADFKSGAIRMLVAT
DIAARGIDIAELPQVVNFELPHVPEDYVHRIGRTGRAGSDGEAVSLVTHEEVKQLRDIER
LIKQSLTRKEFDGFIPTHPLPTSQQAGGGSRSQAKSGQGAKQGQGAKRPHSKGRTGQPQG
EQQRPERRTDGRKGGEQRPADSRGNAEKRDSGDRRQQPEGRKPQQSKPQGSKPQGSKPQG
NRPEGNRSQANKPQGSSAEGKPQVRRRRPKPQGAPKPAA
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgcctccctggggttgtccgcccccattctcaaggccctgagccagaaaggt
tatcagaccccgtcccccatccaggcccaggcaattcctgtggtgctcaagggcggtgac
ctgttggccgcggcccagacaggcacgggcaagaccgcaggtttcaccctgccgttgctg
gaaaatctgagcaagggccaaaaggccggccccaagcaggtgcgcgccctggtattgact
ccgacccgtgagctggcggcgcaaatagccgacaatgtcacggcctacagcaagtacctg
ccgctcaagagcacagttgtgttcggcggcgtgtccatcaatccgcagatcagtgccctg
gcccgcggtgtcgatatcctggtggccacccctggacgcctgctggatctgtatcagcaa
catgccctgagtttccacggtctggaagtgctggtactggacgaggccgaccgtatgctg
gacatgggctttatccatgacatcaaacgcattctcaaactgctgccacccaagcgccag
aatctgctgttctcggccaccttctcggaagagatccgcaccctggcccacggcctgttg
cacaacgccgccgaagtttcggtcacgccgcgcaactccaccgccgagcgggtgcgccag
tggatctgtccggtggacaagaaccagaaaccggccctgctggccgagctgacccgcttc
tatcgctgggagcaggtgctggtcttctgccgtaccaagcatggtgccaaccgtctggca
aaacagatggaggccgaaggcatcaaggccgccgccatccatggcaacaagagccagagt
gcccgtaccaaggcgctggcggatttcaaatccggtgccatccgcatgctggtggcgaca
gacatcgccgcccgcggcatcgacattgccgagctgccccaggtggtcaactttgaactg
ccacacgtgcccgaagactatgtacaccgtatcggccgcaccggacgtgccggcagcgac
ggcgaggccgtgtccctggtgacccatgaagaggtcaaacagctgcgcgatattgagcgc
ctgatcaagcaatcgctgacccgcaaggaattcgacggttttatccccacccatccgctg
ccaaccagccagcaagccgggggcggcagccgctcccaggccaagtcgggccaaggcgcc
aaacagggccagggcgccaagcgtccacatagcaagggtcgcaccggccagccacagggc
gagcaacaacgccccgagcgcaggaccgatggccgcaagggcggcgagcaaaggcccgcc
gatagtcgtggcaatgcggaaaaacgcgacagcggtgacagacgtcaacagcccgagggc
cgcaagccccaacaaagcaagccccagggcagtaagccacagggcagtaaaccacagggc
aacagacctgagggcaacagatctcaggccaacaaacctcaaggcagttcagcagaaggc
aagcctcaggtacgccgtcgtcgtcccaaaccgcagggcgccccaaaaccggcggcttga
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