Shewanella sedimentimangrovi: JYB85_03915
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Entry
JYB85_03915 CDS
T07846
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ssem
Shewanella sedimentimangrovi
Pathway
ssem02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ssem00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
JYB85_03915 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssem03021
]
JYB85_03915 (rpoD)
Transcription machinery [BR:
ssem03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
JYB85_03915 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SQS_PSY
Motif
Other DBs
NCBI-ProteinID:
QSX37995
UniProt:
A0ABX7R4H1
LinkDB
All DBs
Position
complement(942517..944367)
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AA seq
616 aa
AA seq
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MDHTPQSQLKLLLAKGKEQGYLTYAEVNDHLPADMVDSDQIEDIIQMINDMGIRVYEEAP
DADEMMMSEDNTDEDAAEEAAAALATVESELGRTTDPVRMYMREMGTVELLTREGEIVIA
KRIEEGINTVQSSVAEYPQAIAMILEQFDQYEADGLRLSDIISGFVNPDEDDVAPTATHI
GSDLSEDELEDEDDVDDEDEDEEGGDSDDDGAKGPDPEEARERFSALRNAYETALKVIDI
KGREHPEATKALFELGEIFKEFRLVPKQFDRLVKSMREMMDRVRVQERLIMKLCVEQAKM
PKKNFVKLFTGNETDLTWFNKEIDAGRAYSGDLKMVEDDVLRCRSKLESIEGETGLSIAA
IKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE
PSPEELAERMMMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATS
ESLKQATHEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK
LRHPSRSEILKSFLDE
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atggatcatactccgcagtcgcaactcaaattgttgctcgccaaaggtaaagagcaaggt
tacttaacctatgcagaagtgaatgaccacttgcctgcagatatggtcgattccgaccag
atcgaagatattatccagatgatcaatgacatgggtatccgcgtatacgaagaagcgccg
gatgccgatgaaatgatgatgtcggaagacaacaccgacgaagatgcggccgaagaagca
gcggctgccctggcgacggtggagagcgagcttggtcgcaccacggatcccgtgcgcatg
tacatgcgtgaaatgggcacagtggaactgctgacccgcgaaggcgaaatcgtgatcgcc
aagcgcatcgaggaaggtatcaacacggtacaaagctcggtggccgaatatccccaggcc
atcgccatgatcctggaacaattcgaccagtacgaggccgatggcctgcgtctgtcagat
atcatctccggctttgtgaatccggatgaagacgatgttgcccccaccgcgacccacata
ggttcagatctgtccgaagatgagctggaagatgaagacgatgtggatgatgaggacgag
gacgaagaaggtggcgacagcgacgatgatggcgccaagggaccggatcccgaggaagcc
cgcgagcgtttcagcgccctgcgtaacgcctacgaaaccgccctcaaggtcatagacatc
aagggtcgcgaacaccctgaagccaccaaggcgctgtttgagctgggtgaaatcttcaag
gaattccgcctggtacccaagcagttcgaccgtctggtcaagagcatgcgcgaaatgatg
gaccgcgtccgcgttcaggaacgtctgatcatgaagctgtgtgtcgaacaggccaagatg
ccgaagaagaacttcgtcaagctgttcaccggcaatgaaaccgatctgacctggttcaac
aaagaaatcgacgccggtcgcgcttactcgggcgatctgaaaatggtggaagatgacgta
ctgcgctgccgcagcaagctggagtccattgagggcgaaaccggcctgtccattgccgcc
atcaaggacatcaaccgtcgcatgagcattggtgaggccaaggcccgccgtgccaagaag
gaaatggtggaagccaacctgcgtctggtgatctccatcgccaagaagtacaccaaccgc
ggcttgcaattccttgacctgatccaggaaggcaacataggcctgatgaaggccgtggat
aagttcgaataccgtcgtggttacaagttctccacctatgcgacctggtggatccgtcag
gccatcacccgctccatagcggatcaggcccgcaccattcgtattccggtgcacatgatt
gagaccatcaacaagctcaatcgcatcagccgccaaatgctgcaggaaatgggccgagag
ccgtctccggaagaactggccgagcgcatgatgatgccggaagacaagatccgcaaggtg
ctgaagatagccaaagagcctatctccatggaaaccccaatcggtgacgatgaagattcg
catctgggtgactttatcgaggacaccaccctcgaactgccactggacagcgccaccagc
gaaagcctgaagcaggccacccacgaagtgctcgccggcctgaccgcccgtgaagccaag
gtgctgcgtatgcgtttcggtatcgacatgaacacagaccacacccttgaggaagtgggc
aagcagttcgatgtgacccgtgagcgtattcgtcagattgaagccaaggccctgcgcaag
ctgcgccacccaagccgctcggaaatactcaagtccttcctggacgagtaa
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