Shewanella sedimentimangrovi: JYB85_04350
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Entry
JYB85_04350 CDS
T07846
Name
(GenBank) OmpA family protein
KO
K03286
OmpA-OmpF porin, OOP family
Organism
ssem
Shewanella sedimentimangrovi
Brite
KEGG Orthology (KO) [BR:
ssem00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ssem02000
]
JYB85_04350
Transporters [BR:
ssem02000
]
Other transporters
Pores ion channels [TC:
1
]
JYB85_04350
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
OmpA_membrane
OmpA
OMP_b-brl
TSP_3
Opacity
MipA
Motif
Other DBs
NCBI-ProteinID:
QSX38073
UniProt:
A0ABX7R2R3
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All DBs
Position
complement(1031075..1032196)
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AA seq
373 aa
AA seq
DB search
MMNNALKVLLLVSALPLGASASDGLSPWYAGAGLGINNYEPNCDQKTMLTCGEDDPYAWD
VFGGFLFNEHFGVELGYRDLGRAEWIDYSNVLNDVGARGLSLGLVAFFPIAEKWSLSAEA
GAMDYLLYNNKQWGSQYYSDSGIAPFVGAGVGYQMTENLKLQAKYRRYENLDDDAFNTLE
MESNYWGLELSYRFGESKKAAPAPTPAPVPMVKEEPKDSDMDGVFDEQDQCPATPSNHKV
DSKGCTIYKNDVSTYTLGSLRFANNSSVINPNSYADIEKLANYMNQHPGSTVEIGGHASN
VGNPDYNLKLSDKRAQATAKVLIEKYGIAASRVSAKGYGITMPVMDGNSAEAHAANRRVE
AVVTGSEKVAVLK
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atgatgaacaacgcattgaaagtattactgcttgtatcggcactgcccctcggagccagt
gcttcagacggcctcagcccctggtatgcgggtgcaggtttaggtatcaataactacgaa
cccaattgcgatcagaaaaccatgttgacctgtggtgaagatgatccctatgcctgggat
gtgtttggtggtttcctgtttaatgaacatttcggtgttgaactgggctatcgcgatctg
ggccgcgccgaatggatcgattacagcaacgtgctcaacgatgtcggcgcccgtggcctg
agcctgggcctggtggcctttttccccatcgccgaaaagtggagtctgtcagccgaagcc
ggtgccatggattacctgctgtataacaacaagcaatggggcagccaatattacagtgac
agcggcatagccccctttgttggcgcaggtgtcggttatcaaatgaccgagaatctgaag
ctgcaagccaaataccgccgctatgaaaatctggatgacgacgccttcaacaccctggaa
atggaaagcaattactggggtctggaactgagctaccgtttcggcgagtccaagaaggca
gcaccagcgccgacaccggctccagtacccatggtgaaggaagagcccaaagacagtgat
atggacggcgtattcgatgagcaggaccaatgtcccgcaaccccatccaatcacaaggtc
gacagcaaaggctgcaccatctacaagaatgatgtcagcacctataccttgggttcactg
cgttttgccaacaattcttcggtcatcaaccccaactcttatgctgatatcgaaaaattg
gccaactatatgaaccaacatccaggttctaccgttgagattggtggtcatgcctccaac
gtgggcaatcccgactacaacctgaagctgtctgacaagcgcgcccaggctactgccaag
gtgctgattgaaaagtatggtatcgcagcctcaagagtgtccgccaaaggttatggtatt
accatgccggtaatggacggcaacagtgccgaggcccatgccgccaaccgtcgggttgaa
gccgtggtgacaggttctgaaaaagttgcagtactgaagtaa
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