Shewanella sedimentimangrovi: JYB85_04610
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Entry
JYB85_04610 CDS
T07846
Symbol
truB
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
ssem
Shewanella sedimentimangrovi
Brite
KEGG Orthology (KO) [BR:
ssem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ssem03016
]
JYB85_04610 (truB)
Enzymes [BR:
ssem01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
JYB85_04610 (truB)
Transfer RNA biogenesis [BR:
ssem03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
JYB85_04610 (truB)
Prokaryotic type
JYB85_04610 (truB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
FoP_duplication
Motif
Other DBs
NCBI-ProteinID:
QSX38115
UniProt:
A0ABX7R4U2
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All DBs
Position
1088503..1089450
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AA seq
315 aa
AA seq
DB search
MARRSKGRAIDGIVLLDKPTGMSSNFALQRVKRLYNASKAGHTGALDPLATGMLPVCLGE
ATKFSSHLLDADKRYLVTAKLGERTDTSDSDGEVVSTRAVNVTREQLDAALDTFRGDSMQ
VPSMFSALKYQGQPLYKYAREGKEVPREARPITVFELNFISWEGDELTLDIHCSKGTYIR
TIVDDLGEKLGCGAHVIMLRRTQVAKYPYDRMVTLEQLEALVAGANERGDTPESVLDPLL
LPMDTAVADLPLINLPESVGVYLLNGNPVQAPGLKPDQLVRISLGEEQRFVGIGTMDNKG
LLAPKRLVVFSKDGD
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atggcccgtcgttccaagggccgggcgattgacggcatagtgctgctggataagcccacg
ggcatgagttccaactttgccctgcaaagggtcaagcgcctgtacaacgcgtccaaagcg
ggccatacgggggctctggacccgctggcaaccggcatgctgcctgtgtgtttgggcgaa
gccaccaagttttcttcacatctgcttgatgccgacaagcgttatctggtgaccgccaag
ctcggcgagcgcaccgataccagcgactcggatggtgaagtggtcagtacccgagctgtg
aatgtcacccgcgagcaactggatgcggccctggacaccttccgcggtgacagcatgcag
gtgccgtcgatgttctcggccctgaaataccaggggcagccactgtacaagtacgcacgc
gaaggcaaggaagtgccccgagaggcccggcccatcacggtatttgaactcaatttcatc
agttgggaaggtgatgagctgacgttggacattcactgctccaagggcacttatatccga
accatagtcgatgatctgggtgagaagctcggctgtggtgcccatgtgatcatgttgcgc
cgaacccaggtggccaaatatccctacgacaggatggttaccctggaacagctggaagcc
ctggttgcaggggcgaacgagcgaggtgatacgccagaatccgtgctcgacccgctgctg
ctgcccatggatactgcggtggcggatttaccgctgattaatttaccggaaagcgtcggt
gtctatctgctcaatggtaatccggtgcaagcgccgggacttaagcccgaccagttggta
cgcatcagcctgggtgaagagcagcgatttgttggcatcggcacgatggacaacaagggc
ttgctggcacccaaacgcctggtggtattcagcaaggatggggattaa
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