Shewanella sedimentimangrovi: JYB85_04835
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Entry
JYB85_04835 CDS
T07846
Name
(GenBank) serine hydroxymethyltransferase
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
ssem
Shewanella sedimentimangrovi
Pathway
ssem00260
Glycine, serine and threonine metabolism
ssem00460
Cyanoamino acid metabolism
ssem00630
Glyoxylate and dicarboxylate metabolism
ssem00670
One carbon pool by folate
ssem00680
Methane metabolism
ssem01100
Metabolic pathways
ssem01110
Biosynthesis of secondary metabolites
ssem01120
Microbial metabolism in diverse environments
ssem01200
Carbon metabolism
ssem01230
Biosynthesis of amino acids
ssem01240
Biosynthesis of cofactors
ssem04981
Folate transport and metabolism
Module
ssem_M00140
C1-unit interconversion, prokaryotes
Brite
KEGG Orthology (KO) [BR:
ssem00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
JYB85_04835
09102 Energy metabolism
00680 Methane metabolism
JYB85_04835
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
JYB85_04835
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
JYB85_04835
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
JYB85_04835
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
JYB85_04835
Enzymes [BR:
ssem01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
JYB85_04835
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Paralog
Gene cluster
GFIT
Motif
Pfam:
SHMT
Aminotran_1_2
Beta_elim_lyase
Aminotran_5
OKR_DC_1
DegT_DnrJ_EryC1
Motif
Other DBs
NCBI-ProteinID:
QSX38154
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Position
1143315..1144568
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AA seq
417 aa
AA seq
DB search
MLNKTMNIADYDPELFQAIQDETLRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYP
GKRYYGGCEYVDVVETLAIERAKELFGATFANVQPHSGSQANMAVYMTLLQPGDTVLGMN
LAHGGHLTHGSPVNFSGKLYNIIPYGIDEAGKIDYVELERLALEHKPKMIIGGFSAYSGI
VDWAKLREIADKIGAYLFVDMAHVAGLIAAGVYPNPVPHAHVVTSTTHKTLAGPRGGLII
SAADDEELYKKLNSAVFPGGQGGPLMHVIAGKAVAFKEALEPEFKVYQQQVVANAKAMVE
VFKSRGYKIVSGGTDNHLMLLDLIGRDLTGKEADAALGRANITVNKNSVPNDPRSPFVTS
GIRIGTPAITRRGFKEAEARELTGWICDVLDNAKDDAVIERVKGQVLELCARFPVYG
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgctgaacaaaaccatgaatattgccgactatgatcccgagctgttccaggcgatccag
gatgaaaccctgcgtcaggaagagcacattgaactcatcgcctccgagaactacacctct
ccccgcgtgatgcaggctcagggttcacagctgaccaacaagtacgccgaaggttatccc
ggcaagcgttactacggtggatgtgagtatgtcgacgtagtggaaaccctggccattgag
cgtgccaaggaactgttcggtgccactttcgccaacgtgcagcctcactccggctcccag
gccaacatggccgtgtacatgactctgctgcaacccggtgacactgtactgggtatgaac
ctggcccacggtggccacctgacccacggttcaccggtgaacttctccggcaagctgtac
aacatcattccttacggtatcgatgaagccggcaagattgactacgttgagctggagcgc
ctggcgctggagcacaagcccaagatgatcatcggtggcttctccgcttactcgggcata
gttgactgggccaagctgcgtgaaatcgccgacaagattggcgcctacctgtttgttgac
atggcccacgtggccggtctgattgccgccggtgtgtaccccaaccccgtgccacacgcc
cacgtggtgacttctactacccacaagaccctggccggtccccgtggtggtttgatcatc
tctgccgcggacgatgaagagctgtacaagaagctgaactctgcggtattccctggtggt
cagggtggtcctctgatgcacgtgatcgccggtaaagccgtggccttcaaggaagccctg
gagccagaattcaaggtataccaacagcaggttgtggccaacgccaaggccatggtggaa
gtgttcaaatcccgcggctacaagatagtgtccggcggtaccgacaaccacctgatgctg
ctggacctcatcggtcgcgatctgaccggtaaagaagccgacgcagccctgggccgcgcc
aacatcacagttaacaagaactcagtgccaaacgacccacgttcacctttcgtgacctcg
ggtatccgtatcggtactccggccatcacccgccgtggtttcaaggaagccgaagcccgt
gaactgaccggctggatctgtgacgtgctggacaatgccaaagacgacgcagttatcgag
cgcgtgaaaggccaggtgctggaactgtgcgcccgtttccctgtttacggttaa
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