Shewanella sedimentimangrovi: JYB85_05350
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Entry
JYB85_05350 CDS
T07846
Name
(GenBank) thrombospondin type 3 repeat-containing protein
Organism
ssem
Shewanella sedimentimangrovi
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Big_9
Cadherin_4
TSP_3
BamM_C
HYR
TSP3_bac
HYR_4C
Motif
Other DBs
NCBI-ProteinID:
QSX38253
UniProt:
A0ABX7R383
LinkDB
All DBs
Position
complement(1259450..1267633)
Genome browser
AA seq
2727 aa
AA seq
DB search
MMRWLIWILLIGLCPAQSLFAASLTKKVTIVDDTASDKGFVNDADNLVFFQPVHPTLSGF
VTQANGKWAFTTSDGAGSSTVDAVGVQFNGAPALLGIPAESGTLTIGANNQIADLWTNRI
FYRPVVFVSLEDPNLNNGVSIVPTAPITAGNQFLFDVNQATGFNADLAGAKVHYLIAEEG
WHRLADGRMLLISSAEVKHTGFSGQTIALGASFETAVTVAQLQRPMLYKSSGFRQLNDMA
VYQGATVTEGVGNFDSITLRLMQETAVEQANSDTVYAGRVGFMVLGNISSIANTFKLVKD
TNTNIRGGSYLTVPQSNFQFFPHSAAATPLLNRAACAEDDDVQNFCAYLSMPVDAMSRGV
FNTPRLPYMDSNFDPLQMERTFYSEKEWDWEPVIAQEMMNPVSDVDQRPIVGTLAKMFPN
FVADRGWNDVIIGSDDHWHWFATYHYNTCVFDSMNTACVDYAPGNTIIEDKPIEWTASMN
WFDLEPGSNFSGNTHPSSSNSQFLLAVQDNNRRDHVEFYERLTPEDWAAKQTLDYLNLGG
STMRTPLSPKSPSYNETKGLLESYAETWQFFGINVEASASEFFCGTCDGPLPGIDTGGYT
DVWGLDIKVPTLLADRILNSPPWYSPQTTHPHVDKVGQNMRPGDYLFANIPYSIDATDFV
WLRSATGQVSDAVVVASNQFGYQATADDANTFVTMCMTFRNSQRCGKWIKVGQIPFATNV
KIKPQYAEPIAGSGLIGQYTYVAPNSNIYDGLEYQSLYQWQYALSDTWVDYVGENDITFQ
KSVAAGTVIRFCVTPRTHTQAGPTECSVGVKMQLDTDSDGIADDWDTDDDNDGYADWEDR
FPKDASEYLDTDHDGIGNNADLDDDNDGLSDADEIVAGSDALNPDSDGDGTLDGVDPHPT
VYGDLPDFDGDGIADIYDEDRDNDGVVDFFYQIDGTDALQTLVDENDVVLNWARIDDNPY
QACTASQITVTSNADSGPGTLRQALIDLCASEPGADLNVISFNGPMTIMLESPLVIGKGM
KIDGNKAVVLDGQNKTAIFAVAIADRMLKSQFPHLVGLTLRNGFSQGVDADAYTNFDAEL
GTYNKASAVHMYSSSFLLLEHVLIENMTAPVISGRSVELYLENSLVANVSGSDPALITDD
GQISLFSSTLYNSESGALSVVGTGKAQLRNSLLLKGANGSTLCNVATWVQQTASWVEDSE
CGVTSTGYVELADPEYGDYRPVPGSANIDAGETGELPAGAVDLLGNNRVMGAYNPDNPEE
LGGPLYPKMDIGAIEYVYAGDFDGDGVVDSSDAFPNDATETTDSDSDGVGDNSDAFPNDA
NETLDTDSDGIGNNSDNDDDNDGVLDSEDAFPLDAAEWLDTDADGIGNNADTDDDNDNVP
DSEDTFPLDASESVDTDKDGIGNNADSDDDNDGVLDAADAFPLDASEWLDADLDGIGNNA
DPDDDNDGVADVADAFPFNAAEWLDTDLDGIGNNADLDDDNDNVPDSADAFPLDAGESVD
TDSDGIGNNADSDDDGDGVADSSDMFPLDASEWLDSDLDGIGNNLDTDDDNDGVLDIVDA
FPFDASESVDTDSDGIGNNADSDDDNDGVVDTEDAFPLDAAESVDTDLDGIGNNADLDDD
NDGVLDSNDAFPLDAAESVDTDADGIGNNVDLDDDNDGVLDAEDAFPLDATESVDTDSDG
IGNNADSDDDNDGVLDTEDAFPLDASESVDTDSDGIGNNADLDDDNDGVADSEDAFPLDA
TESVDTDSDGIGNNADLDDDNDGVLDSDDAFPLDAAESADTDLDGIGNNADIDDDNDGVV
DSDDAFPLDATESVDTDLDGTGNNADSDDDNDGMLDTEDAFPLDATESVDTDADGIGNNA
DTDDDNDGVVDSDDAFPLDAAESVDTDGDGIGNNADSDDDNDGVLDSEDAFPLDASESVD
TDGDGIGNNADSDDDNDGVLDTEDTFPLDAAESVDTDLDGLGNNADSDDDNDGVVDSDDT
FPLDATESVDTDGDGIGNNADPDDDNDGINDEDDAAPLDPSIGDTQKPVFAELAPLTFEA
TGPMTAVTLPEPQVTDNISTVLTISSDLAAELERGEHLITWTATDGAGNQATAEQLVTIV
DTTAPVFDMLDTLVVNATGRLTDISTLLDISASDLVDGDITAALNGSSELASGAHELELG
ATDSSGNTATTTLSVHILPQLKLARSMTVEAGGEYLLPLQLTGEAPVYPVELNYSLLVDG
QEVNSATATIDQGTQGELPVSVPTGLTLGRELTLKIDSVSHAFVGEDGQAQLQLTEQNQA
PTFSAKVLQQGVATRLLDPLSGQVEIRLQVSDVNVNDSHSVSWQVVEQAFGGSIAEDGLS
MTFDPSELSSGRYAVDVTVTETNTPAPLSSSRRIRFTVESLPQLSSEADTDGDGIVDSQE
GYGDSDGDGIADYLDNDVDGSRLPVNSSTEPMQTTAGVQLALGNITSAIITGSGAGMTMD
DLAEAVANDSGAADSNDSHFSQMAAVLDFTLSGTFQAGQSVAVVFPMPRGTALPEDAVYR
KYTPQQGWYDFVEDANNSISSAPLADGECPQVGADSFEPGLVAGYQCVQLLLQDGGPNDA
DGTANGVIEDPGVISVLSQNQLPVAQADSAAILDSQVLVIDVLANDTDPDGDSLSVIGAS
VDNGTVELLADNTLRYTPSSGFSGEAMISYQVSDGFGGSAQGQVIVTVNLTPVTEPDTPA
PKSHGGSVPPWSLLLLGMALCTRRRAA
NT seq
8184 nt
NT seq
+upstream
nt +downstream
nt
atgatgcgttggttaatttggattctgttgatcggcttgtgcccggcacaaagcctgttt
gcagccagcctgacgaaaaaagtgaccatcgtcgatgacactgccagcgacaagggtttt
gtgaatgatgccgataatctggtgttttttcagccagtacatccgaccttatcgggcttt
gttacacaagccaatggcaaatgggcttttaccaccagtgatggcgcgggctcctcaact
gtagacgcggttggagtacagtttaacggtgcaccggcgctactcggtattccggccgaa
tccggcactttaaccattggtgccaataaccagattgccgacctgtggactaaccgtatt
ttttatcgtccggtagtgtttgttagcctggaagatccaaatctgaataacggcgtcagc
atagtaccgacggcgccgattacggccggtaatcagtttttattcgatgtgaatcaggcg
actggttttaacgctgacttagccggtgccaaggtgcattacctgattgcagaagaaggc
tggcaccgcctggccgatggccgcatgttgctgatctcaagtgctgaagtgaagcacacc
ggcttcagcggtcaaaccattgccctgggcgccagctttgaaactgcggtaacagtggcg
cagttacagcggccgatgctttataaaagcagtggctttcgccagttaaacgatatggcg
gtatatcagggcgcgactgtgacagaaggcgtgggcaattttgacagcatcaccttacgg
ctgatgcaggagactgctgtagagcaggctaatagtgatacggtttatgccggccgtgtc
ggttttatggtgctgggtaatatcagcagtattgccaatacctttaaactggttaaagac
actaataccaatatccgaggtggcagctatctaactgttccacaatcaaattttcagttt
ttcccgcacagtgctgccgcaacaccgttattaaaccgcgctgcctgcgctgaagatgac
gatgtacaaaatttttgtgcgtatttgtcgatgccggtggatgcgatgagccgtggtgtg
tttaacacgccacgcttgccctatatggattccaatttcgacccgctgcaaatggagcgc
accttctactcagaaaaggaatgggattgggagccggtaattgcgcaggaaatgatgaat
ccggtcagcgatgttgatcagcgcccaatcgtcggcaccttggctaagatgttccccaat
tttgtcgctgaccgcggctggaatgatgtcatcataggtagtgatgaccattggcactgg
ttcgctacctatcactacaacacctgtgtgttcgacagtatgaacactgcctgtgtcgat
tacgcaccaggcaataccattattgaagacaaaccaatcgaatggaccgccagtatgaac
tggttcgatctcgaacccggctcaaacttttccggcaacacccatccaagttcaagcaat
agccagtttttactggcggtacaagacaacaatcgcagagatcacgttgaattttatgag
cggctgacgcctgaagattgggctgccaaacaaaccctggattatctgaatctgggaggt
tcaaccatgcggacgccgctgtcgccaaagtctccaagttacaacgaaaccaaagggctg
ctggaaagctatgccgagacctggcagttttttggcattaatgttgaagccagtgccagt
gaattcttttgcggcacctgcgatgggccattacctgggatagatacggggggttacact
gacgtttggggccttgatattaaagttccaaccctgctggctgaccggatattgaatagc
ccgccctggtatagccctcagacgacccacccacatgttgataaagtcggccaaaatatg
cgccccggcgactatctgtttgccaatattccgtactcaattgacgccacagattttgtc
tggctgcgttcggcaaccgggcaagtcagtgatgctgtggtggttgcgagcaatcaattt
ggctatcaggccaccgccgatgatgccaatacctttgtcaccatgtgcatgacattcaga
aacagccaacgctgcggtaaatggattaaagttgggcaaataccgttcgcaaccaatgta
aaaattaaaccgcagtacgccgagcctatcgccggttccgggttaattggacagtacact
tacgttgcgccgaatagcaacatctatgacggtttggaatatcaaagtctgtaccagtgg
cagtatgcactgtctgacacctgggtcgactatgtcggtgagaatgacataacctttcag
aaaagtgttgctgccggtactgttattcgtttttgcgtcacgccacgtacccacacacag
gcaggcccaaccgagtgctctgttggcgtaaaaatgcaattggataccgatagcgacggc
atcgcagatgattgggacacagatgacgacaatgatggctatgcggattgggaagacagg
tttcccaaagatgccagcgaatatctggataccgaccatgatggcattggcaacaatgcc
gatctcgacgatgacaatgacggtttaagtgatgccgatgaaattgttgccggttcagat
gcattaaaccctgacagtgacggcgacggcaccctggatggcgttgatccgcatccaaca
gtgtacggtgacctgcctgacttcgatggcgacggtattgctgatatttatgatgaagac
cgcgataacgatggcgtagtcgactttttctaccaaattgatggtacagatgctctacaa
accctggtcgatgaaaatgacgtggtgctcaattgggcgcgcatcgatgacaacccttat
caagcttgtactgcaagccaaatcactgtaaccagcaatgccgatagtggcccgggcacc
ttacgccaggcattaatcgatttatgtgccagtgagcccggagccgatctgaatgtcatc
agcttcaacggccctatgaccataatgcttgaatcgccgttagtgattggcaaaggcatg
aagatagatggtaataaagctgttgtgctggacgggcaaaataagacagctatttttgcg
gttgccatagccgacaggatgctcaaaagccaattcccacatttagtcggcttaaccttg
cgtaacggttttagtcagggtgttgatgccgacgcttatacaaactttgatgctgagctt
ggtacctataataaggccagcgccgtgcatatgtattccagttcatttctgttgttggag
catgtgctgattgaaaatatgacagcaccggttattagcggccgcagtgttgagctttat
ctagaaaacagtctggtggctaatgttagtggctccgatccggcactgatcacggacgac
ggccagatttcgctgttctccagcaccctttacaacagtgaaagcggcgctctgtctgtg
gttggcacaggtaaagcccagttgcgtaatagcttgttgttaaaaggcgctaatggctca
accctgtgtaatgtagcaacctgggtgcaacaaaccgccagctgggtagaagatagcgag
tgtggcgttacctctactggctatgttgaattggccgatccagagtatggcgactacaga
cctgtgccgggcagcgccaatatcgatgccggtgagacaggtgaacttccggcaggcgca
gtcgacttgctgggtaataaccgtgtaatgggggcatacaatcctgataacccggaagaa
ctgggcgggccactctatccgaagatggatataggtgccatcgaatatgtgtatgctggt
gactttgacggtgacggtgtcgtcgacagctctgatgccttccccaacgatgcaacggaa
accaccgacagcgacagcgatggtgtcggtgataacagcgatgctttccccaatgatgcc
aacgagaccttggataccgactcagatggtataggtaataacagcgacaacgacgacgat
aacgacggcgtgttggacagcgaagatgccttcccattggatgctgccgagtggctggat
accgatgccgatggcattggcaataatgccgatacggatgatgacaacgacaatgtcccg
gacagcgaagacactttcccgctggatgccagcgaatctgtcgacaccgacaaggacggt
ataggcaacaatgccgatagcgacgatgacaacgatggtgtgttggatgccgccgatgcc
ttcccgctggatgccagcgagtggctggatgcagatctcgacggcataggtaacaacgcc
gatccggacgacgacaacgacggtgttgcggacgtggccgatgccttcccctttaatgcc
gccgaatggttggatacggatctcgatggcataggcaacaatgccgatttggatgatgac
aacgataatgtgccggacagcgccgatgccttcccgctggatgccggcgaatctgttgac
acagatagcgacggcataggcaacaatgccgacagcgacgacgatggagatggtgttgcc
gatagcagcgatatgttccctctggatgccagcgagtggttggactcggatctcgacggc
ataggcaataacttggataccgacgatgataacgacggcgtgttggatatagtcgatgcc
ttcccctttgacgccagcgagtctgtcgatacagactccgatggcataggtaacaatgcc
gacagcgatgatgacaacgacggcgtagtggacacagaggatgccttcccgctggatgcg
gcagaaagtgtcgataccgacctcgacggcataggcaacaatgcggatttggatgacgac
aacgacggtgtgctcgacagcaacgatgccttcccgctggatgctgctgagtctgtcgat
accgacgccgacggcataggcaacaatgtcgatttggatgacgacaacgacggcgtgctg
gacgcagaggacgccttcccgctggatgcgaccgagtctgtcgatacagactccgacggt
ataggcaacaatgctgacagcgacgacgataacgacggtgtgttggacacagaagatgcc
ttcccgctcgatgccagcgagtctgtcgacacagactccgatggcataggcaacaatgcc
gatttggatgacgacaacgacggcgtagcggacagcgaagatgccttcccactggatgcc
actgagtctgtcgatacagactccgatggcataggtaacaacgccgatttggatgacgac
aacgacggtgtgttggacagcgacgatgccttcccgctggatgcggctgagtctgccgat
accgacctcgacggcattggcaacaatgccgatatcgacgatgacaacgacggcgtagtg
gacagcgacgatgccttcccgctggatgcgaccgaatctgtcgacaccgacctcgatggc
acaggcaacaatgccgacagcgacgatgacaacgacggcatgctggacacagaagacgcc
ttcccgctggacgcgactgagtctgtcgacactgatgccgacggcataggcaacaatgcc
gacacagatgacgacaacgatggcgtagtcgacagtgacgatgccttcccgctggacgct
gctgagtctgtcgacacagacggtgacggtataggcaacaatgccgatagcgacgatgac
aacgacggcgtgctcgacagcgaggatgccttcccgctcgatgccagcgagtctgtcgat
accgacggtgacggcattggtaacaatgccgacagcgacgatgacaatgacggtgtgctg
gacacagaagacaccttcccgctggacgctgctgagtctgtcgacaccgacctcgatggc
cttggcaacaatgccgacagcgatgacgacaacgacggtgtagtggacagcgacgacacc
ttcccgctcgatgccaccgagtctgtcgatacagacggtgacggcataggcaacaatgcc
gatccggacgatgacaacgacggtatcaatgatgaagatgacgcggcgccgctggacccc
agcattggcgatacccaaaagccggtgtttgccgagctggcgccactgacctttgaagcc
acggggcctatgacagcagtaaccctgccagagccacaggtgaccgataacatcagcaca
gtgctgaccattagctcggatctggctgcagagctggagcggggcgagcacctgattacc
tggaccgcaaccgacggggccggtaatcaggccactgccgagcagttggtaaccatagtc
gataccactgcacctgtgtttgatatgctggacaccttggtggttaacgctacaggccgc
ctgaccgatatcagcacgctgctggatatcagcgccagcgatctggtggacggtgatatc
accgcagcacttaatggcagcagtgagctggcaagcggcgcccatgagcttgagcttggt
gcgaccgacagctcaggcaataccgccaccacgacactgagcgtgcatattctgccgcag
cttaagctggcccggagcatgacggttgaagccggtggcgagtatctgctgccactgcaa
ttaaccggcgaagcccccgtgtatccggtagaactgaactactcactgctggtcgatggc
caggaagtgaacagcgccacagcgaccatagaccaggggacacagggtgaattgccggtg
tctgtcccaaccgggctgaccttgggtcgcgagctgacactcaagatagacagcgtgagc
catgcctttgttggcgaggacggtcaggcacaattgcagttaaccgagcaaaatcaggcc
cccaccttcagcgccaaggtgttgcagcagggcgttgccacacgcttactggatccgctt
tccggtcaggtagaaatacggctgcaggtaagcgatgttaacgtcaatgacagccatagc
gtcagctggcaggtggtggagcaagcgtttggtggcagcattgccgaagatggcctgagc
atgacctttgatcccagcgagttgagcagtggccgctacgccgtggacgtcacagtgacg
gaaaccaatacccctgcgccgctcagtagcagccgccgcattcgcttcaccgtcgagtcg
ctgccgcagctgagcagcgaggcagacacagacggcgacggcattgtcgacagccaggaa
ggttacggcgacagtgatggtgacggtatcgccgattatctggataacgatgtggatggc
agccgtttgccggtaaatagtagcacagagccaatgcaaaccacggccggcgtgcagttg
gcgcttggcaacatcaccagcgccatcatcaccggcagcggcgccggcatgaccatggac
gacctggcagaggctgtggcgaatgacagcggcgccgctgacagcaacgacagccacttt
agccagatggcggccgtgctcgacttcaccctgagcggcaccttccaggcggggcaatcg
gttgccgtggtattccccatgccacggggcactgcgctgcccgaggatgctgtgtatcgt
aagtacacaccgcaacaaggctggtatgactttgttgaagacgccaacaacagcatcagc
tcggcaccgcttgctgacggcgagtgcccgcaagtcggtgccgacagttttgagcccggc
ctggtggcaggctatcaatgcgtgcaactgctgctgcaggacggcggccccaacgatgca
gatggcactgccaacggcgtgattgaagatccgggcgtcatcagtgtgctgagtcagaac
caactgccggtggcacaagcggatagcgcagccattctggatagccaggtgctggtgatt
gacgtgctggccaacgacacagacccagatggtgacagcttaagcgtcatcggcgccagc
gttgataatggcactgtagagctgctcgccgataataccctgcgctacaccccaagcagc
ggcttcagcggtgaggcgatgatcagctatcaggtcagcgatggttttggtggcagcgca
cagggtcaggtaattgtgaccgtcaacctgacgccggtcactgagcccgataccccggcg
ccgaaaagccacggtggttcagtgccgccttggtcgctgttgctgctgggtatggcactg
tgcacacgtcgccgggcagcctaa
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integrated database retrieval system
