Shewanella sedimentimangrovi: JYB85_05695
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Entry
JYB85_05695 CDS
T07846
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ssem
Shewanella sedimentimangrovi
Pathway
ssem03030
DNA replication
ssem03430
Mismatch repair
ssem03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ssem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JYB85_05695 (dnaE)
03430 Mismatch repair
JYB85_05695 (dnaE)
03440 Homologous recombination
JYB85_05695 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssem03032
]
JYB85_05695 (dnaE)
03400 DNA repair and recombination proteins [BR:
ssem03400
]
JYB85_05695 (dnaE)
Enzymes [BR:
ssem01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
JYB85_05695 (dnaE)
DNA replication proteins [BR:
ssem03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
JYB85_05695 (dnaE)
DNA repair and recombination proteins [BR:
ssem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
JYB85_05695 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
DUF655
T2SSK
Motif
Other DBs
NCBI-ProteinID:
QSX38318
LinkDB
All DBs
Position
1355040..1358513
Genome browser
AA seq
1157 aa
AA seq
DB search
MSQPKFVHLRVHSDFSMTDGLAKVKPILGKAEAEGMAAIALTDQNNLCGLVKFYSTCHDK
GIKPIIGADFWVLVPGVEGEFCALTVIAMDNQGYQNLTQLISRAYLRGQVQGRVALDQEW
LLEFNEGILLLSGGREGDLGKALLKGNASQAASLSEFYQRHFPDRYFIELIRTGRADEER
YLHMAVAHAAEWGLPVVATNQVVFLTPDDFEAHEIRVAISDGFTLADNRRPKKYSDQQYL
RSIDEMCELFADIPEALENTVEIAKRCNVTVRLGEYFLPNFPTGDLSIEDFLVARSKQGL
EERLEFLFPDPQVRAERRGEYDERLDIELKVINQMGFPGYFLIVMEFIQWGKDNGIPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAE
LYGREAVSQIITFGTMAAKAVVRDVGRVLGHAYGFVDRISKMIPPEPGMTLAKAFEVEPG
LQEAYDADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTKITDFSPLYCDAEGNNPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINPRLKRMGKDPVRIEAIPLDDKKSFALL
QRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGREE
ISYPDSQWQHECLKPILEPTYGIILYQEQVMQIAQTLSGYTLGGADMLRRAMGKKKPEEM
AKQRSVFKSGAENNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA
EFMAAVMSADMDNTDKIVTLVDECERMGLPLIPPDVNKGQFKFTVDEDLNIVYGIGAIKG
VGEGPVEAILEAREAGPFKDLFDFCARVDLKKLNKRVIEKLISSGALDALGPHRAAMMAT
LPEAIRAADQHAKAEAIGQHDMFGLLNSEPQDGKQQFVECTPWPDKIWLEGERETLGLYL
TGHPINQYIKELKHYTSGRLKDIHPTERGKTVKAAGLVVATRVMLTKRGSKMGLVTLDDK
SARLEVMLFTEAFEKFNHLLEKDRILICEGEVSFDDFSGGNRMTARNIIDISEARSHFAT
ALEVDLDAEAIAPGQLDKFAELVRPWRQGAVPMLINYRQAQASGQFRLGDDWRVNPSDEL
VLALQTLLGPDKVRILF
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgtctcagcccaagttcgtccacctgcgcgtgcactccgacttctccatgaccgatggt
ctggccaaggtcaagcccatactcggcaaggccgaggccgaaggcatggcggcgattgcg
ctgacggatcagaacaacctctgtggtttggtgaagttttacagtacctgccatgacaag
ggcatcaagcccattatcggtgccgacttttgggtgctggtgccgggggttgagggcgag
ttttgcgccctgaccgtcattgccatggataaccagggctaccagaacctgacccagctg
atcagccgggcttacctgcgtggccaggtgcagggtagggtggcgctggatcaggaatgg
ttgctggaattcaatgagggcattttgctgctctccggtggccgcgaaggggatctgggc
aaggcactgctgaagggcaacgcctcccaggcggcgtccttgagtgagttttaccaacgc
catttcccggatcgctattttatcgagcttatccgaaccggccgtgccgatgaggagcgc
tacctgcacatggcggtggcccacgccgccgagtggggcctgcccgtggtggccaccaat
caggtggtgttcctgaccccggacgacttcgaggcccacgaaattcgggtcgccatttct
gatggtttcaccctggccgataaccgccggccgaagaaatacagcgatcagcaatacctg
cgctccatcgacgagatgtgcgagctgttcgccgatatccccgaagccctcgaaaataca
gtggaaattgccaagcgctgtaacgtgactgtgcgcctgggggaatacttcctgcccaat
ttcccaaccggcgatctgtccatcgaagattttctggtggcccgctccaaacaggggttg
gaagagcggctcgaattcctgtttccggacccgcaagttagggccgagaggcgcggcgag
tacgacgagcgcctggacatagagctcaaggttatcaaccagatgggcttccccggttac
ttccttatcgtgatggagtttatccagtggggtaaggacaacggcattcccgtggggccg
gggcgcggttcgggcgcaggttccctggtggcctatgccctgaaaattaccgacctcgac
ccgctggaatttgacctgctgttcgaacgtttccttaaccccgagcgggtatccatgccc
gacttcgacgtcgacttctgcatggacaggcgcgacgaagtgattgaccacgtggccgaa
ctctacggccgcgaggcggtatcccagatcatcaccttcggtaccatggccgccaaggcc
gtggtgcgcgacgttggccgggtgctaggccacgcctacggctttgtggaccggatctcc
aagatgatcccgccggagcccggcatgaccctggccaaggcattcgaggtggagcccggg
ctgcaggaggcctatgacgccgatgaggaagtgaaagatcttatcgacatggcccgcaag
ctcgagggcgtgacccgtaacgccggcaagcacgccgggggcgtggtgattgcgcccacc
aagatcaccgacttctcgcccctgtactgcgacgccgagggcaataacccggtcacccag
ttcgacaagaacgacgtggaatacgccgggctggtgaagttcgactttttgggtctgcgg
accctgaccattatcgattgggccctggggatgattaaccccaggctcaagcgcatgggc
aaggatcctgtgcggattgaagccattccgctcgatgacaaaaaatccttcgccctcttg
cagcgctacgaaaccacggcggtgttccagctggaatcccgcggcatgaaggatctgatt
aaacggctgcagccggactgcttcgaagatatgatcgccctggtggccctgttccgtccg
gggccgctgcaatcgggcatggtggataactttatcgagcgtaagcacggccgcgaggag
atctcctacccggacagccagtggcagcacgagtgcctcaagcccatcctcgaacccacc
tacggcatcatcctctatcaggaacaggtgatgcagattgcccagactctgtccggctat
accctgggcggcgccgacatgctgcgccgcgccatgggtaagaaaaagcccgaggagatg
gccaagcagcgcagcgtgttcaaaagcggggccgaaaacaacggcgtcgacggcgaactg
gcgatgaagatcttcgacctggtggagaaattcgccggttacggcttcaacaaatcccac
tcggccgcctatgctttggtgtcctaccagaccctgtggcttaagacccactatccggcg
gaatttatggccgcggtaatgtccgccgatatggacaacaccgacaagatagtgaccctg
gtggacgagtgtgagcgcatgggcttgccgctgatcccgccggacgttaacaagggccag
ttcaagttcaccgtggatgaagatctcaatatcgtctacggcatcggcgccatcaagggc
gtgggcgaaggcccggtggaggccattcttgaggcccgcgaggccggtcccttcaaggac
ctgttcgacttctgcgcccgggtggacctgaaaaaactcaacaagcgggtgatagagaaa
ctgataagctcgggcgccctcgacgccctggggccacatcgcgccgccatgatggcgacc
ttgcccgaagccatccgcgccgccgatcagcacgccaaggccgaggccataggccagcac
gacatgttcggcctgctcaacagcgagccccaggatggcaagcagcaatttgttgaatgt
accccctggccggacaagatctggctcgaaggggagcgggaaaccctgggcctgtacctc
acgggccaccccatcaaccagtacatcaaggaactcaagcattacacctccggcaggctc
aaggacatacaccccaccgagcgcggcaaaactgtcaaggctgcgggcctggtggtggcc
accagggtgatgctgaccaagcgcggctccaagatggggctggtgactttggatgacaag
agcgcccgcctggaggtgatgctgtttaccgaggcgttcgagaagtttaatcacctgctg
gagaaggacaggatccttatctgtgagggcgaggtcagctttgatgacttctccggcggc
aaccgcatgacggcacgcaatatcatcgacatcagtgaggcccgcagccatttcgccacc
gcgctggaagtggaccttgatgccgaggccatagcccctgggcagctggacaagttcgcc
gagctggtgaggccctggcgtcagggtgccgtgcccatgctgatcaattaccgtcaggcc
caggcctcgggccagttccgcctcggtgacgattggcgcgtcaaccccagtgacgagctg
gtgctggcgctgcaaaccctgctggggccggacaaggtcaggatactgttctga
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