Shewanella sedimentimangrovi: JYB85_05820
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Entry
JYB85_05820 CDS
T07846
Name
(GenBank) collagenase
KO
K01387
microbial collagenase [EC:
3.4.24.3
]
Organism
ssem
Shewanella sedimentimangrovi
Brite
KEGG Orthology (KO) [BR:
ssem00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ssem01002
]
JYB85_05820
09183 Protein families: signaling and cellular processes
02042 Bacterial toxins [BR:
ssem02042
]
JYB85_05820
Enzymes [BR:
ssem01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.24 Metalloendopeptidases
3.4.24.3 microbial collagenase
JYB85_05820
Peptidases and inhibitors [BR:
ssem01002
]
Metallo peptidases
Family M9
JYB85_05820
Bacterial toxins [BR:
ssem02042
]
Toxins that damage the extracellular matrix
Hyaluronidases/Collagenases
JYB85_05820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M9
Peptidase_M9_N
PPC
Peptidase_M61
Motif
Other DBs
NCBI-ProteinID:
QSX38341
LinkDB
All DBs
Position
1386842..1389610
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AA seq
922 aa
AA seq
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MNRLRTKRAPLTLLCTLLPGMAMADGLNPGHPTRDQLASKAQVLPVEAAPNATTTTLKQQ
LHSHKPTDKLANRQPDSGAARQPAQQQLTTAAGACSAAEIAPLTGTALTDALLAADLSCV
NAFFNAGTDYAQALFNEADMVSVSNRLAQMAPAYTGVDDGHLLNLITYLRAGYFVQWGLV
DEVGAYGAALDSASLAALQQFFANPHAFDISSANGDVLSEAVILIDSAHQISHFLDVAER
LLQQFDSSYLNYGSMRSATNAAYGLLYKGQWDSNYVTTLEARLSLLDTLDNFIKDNGFLI
DSGNDYLINNAAYELGRMLMYPGAIKDKAKPMVQSILQRYSMSGQGSGIWLAAAEMADYY
DNCADYGVCGYQDQLQAQILSIHYTCSPTLKIRAQAMSTVELADSCGQLSAQETDFHQKL
ATADVPVADDLNTDLEVVVFDDYSNYSKYAGVFFGIGTNNGGMYLEGNPADPDNQARFIA
HEASWLPEFEVWNLRHEYVHYLDGRFNMHGDFSETMMYGSAHEESTVWWVEGLAEYISQG
DDNQKAIDIGRANNYALSTLFGNNYSSGTDRVYRGGYLAVRYMFERHRNDVDAMLGFFRA
GNYDAYANLMTAIGSSYDADFAQWLADVTTSISDRDGDGVADGDDAFPDDATEWLDSDHD
GIGNNADTDDDNDGVLDSDDLDPLDPNVGGAGSCSTAACDPNVATMTAGIAKQGISSTYA
AYFSIWVPAGTSTLRFTGAGGSGNADLYVAAGRYPSRSDFDARSTQSGNNEIVFINAPAT
GGYYYVSLFTDSGFADMTLLAEFDVSQSGGSIPADAADPAQQTLYNGIAKAGIASDSARY
YSIWVPSGATNLNIAISGGTGDADLYVRFGDWPTESVWDARPYVGGNNETATLAAPQTGG
YYYIMLKAFQPFSDVTLLATHD
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atgaacagattgcgaaccaaacgcgcgcccctgacgctgctctgtaccttgttgcctggc
atggccatggcagacggactgaaccccggtcatccgacccgggatcagcttgcgtccaag
gcacaggtgctgccggttgaggccgcacccaacgcaacaaccactaccctgaaacaacaa
ctccattcacacaaaccgaccgataagctggcaaacaggcagcccgactccggcgcggcc
aggcagcctgctcagcagcaactgaccacggccgccggcgcgtgcagtgctgctgagata
gcgccgcttacgggcacggccctgaccgacgccctgttggcggcggacttgtcctgcgtg
aacgcctttttcaacgcgggcacagattatgcccaggcgctgttcaacgaggcggacatg
gtcagcgtcagcaaccgcctggcccagatggcacctgcctataccggtgtcgatgatggc
cacctgctgaatctcattacctacctgcgcgcgggatactttgtgcagtgggggctggtg
gatgaggtgggcgcctatggcgcggcactcgacagcgccagcctggcggccttgcagcag
ttttttgctaacccccacgccttcgatatcagctccgccaacggcgatgtcttgtccgag
gcggtgattttgatagacagcgcccatcaaatttcccacttcctcgatgtggccgagcgc
ttgctgcaacagtttgacagcagttacctcaactacggctccatgcgcagcgccaccaac
gccgcctatggcctgctgtacaagggccagtgggacagcaactatgtcaccaccctggag
gccaggctgtcgctgctcgataccctggataacttcatcaaggacaacggcttccttatc
gacagcggcaatgattacctaatcaacaacgccgcctatgagctggggcgtatgctgatg
tatcccggcgccatcaaggacaaggccaaacccatggtccagtcgattctgcagcgctac
agcatgtctgggcagggcagtggtatctggcttgcggccgcggaaatggccgattactac
gataattgcgccgactatggtgtctgcggttatcaggatcaactgcaggcccagatcctc
agcattcactacacctgctctccaaccctgaagatccgtgcccaggccatgagtacggtt
gagctggcagattcctgtggccagctgtcggcccaggaaacggacttccatcagaagctg
gccaccgccgacgtgccggtggcggacgatctcaacacggatctggaagtggtggtgttt
gatgattacagcaactacagcaagtatgccggggtgttctttggcataggcaccaacaac
ggtggtatgtatctggaaggcaatccggcggatcccgataatcaggcgcgttttattgcc
cacgaggccagctggctaccggaatttgaggtgtggaacctgcgccacgagtatgtccac
tacctcgacggccgcttcaacatgcacggcgacttctccgagaccatgatgtacggctcg
gcccacgaagaaagcaccgtctggtgggtggaaggtctggccgagtatatctcccagggc
gatgacaaccagaaggccatagacataggccgcgccaacaactacgccctgagcaccctc
ttcggcaacaactacagcagtggtaccgacagggtttaccgcggtggctaccttgcggtg
cgttacatgttcgagcgccatcgcaacgacgtggatgccatgctgggctttttccgggcc
ggcaactatgacgcctatgccaacctgatgacagccataggcagcagctacgacgccgac
tttgcccagtggctggccgatgtcaccacaagcatcagcgacagggacggcgacggtgta
gccgacggcgacgatgccttccccgatgacgcgaccgagtggctggatagcgaccatgac
ggcataggcaacaatgccgacaccgacgatgacaacgatggcgtgcttgacagtgacgat
ctcgacccgctggaccccaatgtcggtggcgccggaagttgtagcactgccgcctgtgac
cccaatgtggcgaccatgaccgcgggcatagccaagcagggcatctcctcgacctacgcg
gcctacttctccatctgggttccggccggcaccagtaccctgcgcttcaccggcgctggt
ggctcgggcaatgccgatctttatgttgccgccggccgttaccccagccgcagcgacttt
gatgcccgttcaactcaaagtggcaataacgagattgtgttcatcaacgcccctgcgaca
ggtggctactattatgtgtccctgttcaccgacagcggctttgccgacatgacgctgctg
gcagagtttgatgtaagccaaagtggcggcagcatacccgctgatgcggccgatcccgcc
cagcagaccctgtacaacggcatcgccaaggccggtatagcttctgacagcgcccgctat
tactccatctgggtgccttcgggagcaaccaacctgaatattgccatctccggcggtaca
ggggatgccgatctgtacgtgcgctttggtgactggccaacggagtccgtctgggacgcc
aggccctacgtgggcggtaataacgagacagccactctggcagcaccgcaaaccggcggc
tactactacatcatgctcaaggcgttccagcccttcagcgatgtcaccctgctggcgacc
catgactga
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