Shewanella sedimentimangrovi: JYB85_06775
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Entry
JYB85_06775 CDS
T07846
Name
(GenBank) SMC family ATPase
KO
K03546
DNA repair protein SbcC/Rad50
Organism
ssem
Shewanella sedimentimangrovi
Brite
KEGG Orthology (KO) [BR:
ssem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssem03400
]
JYB85_06775
DNA repair and recombination proteins [BR:
ssem03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
JYB85_06775
Archaeal homologous recombinant proteins
JYB85_06775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
GBBH-like_N
Motif
Other DBs
NCBI-ProteinID:
QSX38511
LinkDB
All DBs
Position
1599827..1602892
Genome browser
AA seq
1021 aa
AA seq
DB search
MRPLTLELCAFGPFADRQTIDFSVLGSNPLFLINGLTGAGKTSILDAICYALYGKTTGNE
REASQMRCDTADDGLLTEVSFEFELGDRRYLVRRIPEQLRAKSRGDGSTVQKAEAELCRI
HTDGRREVLVASKVSDATSLIEELTGLDVDQFRQVMVLPQGKFRELLLADSKEREKIFSQ
LFQTHVYRRIEERLKQQALDIKGQKRDLDSRRTGILQTVGLESQNELDAAIAALTPELAQ
AKLVRDNTAAAMAEATRSFDQAQALAQEFAQLSLLGQQLTIIEAGREQLTAKETQLTLAR
QAEKLMPLKRQLLQRQQENQEAAQQQQSALEARGLAEQALVRANDAASRMPELDAQKQTL
LAEQQQLQDWQPRMAALEDIEGQLAQAGSQLESARGQQQQGLQELARLEASRQAMLESVS
PLEAKASLRVELTEQLARQEVILERVRQLDALAGQQQTLHRQLGDLEKQGLEAKAAKEQT
ENQRKTLELAWHTGQAAMLANELKQGSPCPVCGSCSHPSPAQTEVQLPSQQELESARLLE
QQALQQYQETRSNYSHTKSRLKELEQQFRQLSEQLGEAATQAPAAHEQHLQSLRLALADA
SSASESLHKLRGDIAKAEQAWHTQRQTTEQLARQVEEANQRLIQLTENRKATLAAMPKAL
AELEHPRALSARLEAINTLLTSIATEQESLVSAHQEASNELARAKGAVQDTAQQYQRVTS
RLAEADAEFSRALQSSGFADTAALEDAWRSETQQQSLEQEIQDWHRQRHSLREQLAAQQR
KLQERQAPELDALTAQKSAADARFQQSDEQWMRLNGRMQELGNAARQLQQEADSARALDA
QYALVGTLADVANGNSQSKLSLQRFVLSVLLDDVLREASQRLQLMSKGRYRLLRKEDRAK
GNKASGLELEVEDAYSGKVRAVATLSGGESFMAALSLALGLSDVVQAYAGGIKLDTLFID
EGFGSLDQESLEMAIRTLMDLQASGRMIGVISHVSEMKEQLQTRIDVLKAAAGSEIRLHL
P
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atgagaccactgacactggaactgtgcgcctttggcccctttgctgaccggcaaaccatc
gacttcagcgtcctcggcagtaacccgctgtttctgatcaacgggctcaccggggctggg
aaaaccagcatcctggatgctatctgttatgcactctacggcaagaccacgggaaacgaa
cgtgaagccagccagatgcgttgcgataccgccgatgatggtcttctgaccgaggtcagc
tttgagtttgaactgggcgacagacgttatttggtgcgccggatcccggagcagttgcgg
gctaaaagtcgcggcgatggcagcacggtgcaaaaggccgaggcagaactatgccgtatc
catactgacggacgccgagaggtgctggtggccagcaaggtcagcgatgccaccagtttg
attgaggaactgaccgggctggatgtggaccagttccgccaggttatggtcttgccccag
ggtaagtttcgtgagttgttgctggccgactccaaggagcgggaaaagattttcagccaa
ctgtttcagacccatgtgtatcgccgtattgaagagcgtctgaagcagcaggcgttggac
atcaaggggcaaaagcgggatctggattcgcgccgcaccggcatactgcaaaccgtgggc
cttgaaagtcagaacgaactggatgcggccattgccgccctgacgcccgagctggcacag
gcaaagctggtgcgggacaacacggcggcggccatggccgaggcgaccaggtcattcgac
caggctcaggccttggctcaggaatttgcccagcttagccttttggggcagcaactgacc
atcatagaagctggccgcgagcagctaacggccaaagaaacgcaactgaccctggcacgc
caggccgaaaaattgatgccgctcaagcgtcagttgctgcagcggcagcaggaaaatcag
gaagccgcgcagcaacagcaaagtgcgcttgaagcaagggggcttgccgagcaagcactg
gtgcgcgcgaacgatgcggcctccaggatgcccgagttggatgcacaaaaacaaacactg
ctggcggaacagcagcagttgcaggattggcagccgagaatggccgcccttgaggatata
gaggggcagttggcgcaggccggtagccaactggagtcggcccgcgggcagcaacaacag
gggctgcaagagctggcccgcttggaagcatcccgacaagccatgctcgagtccgtgagc
ccattggaggccaaggcgagtttacgggtggaattgaccgaacagttggcgcgccaggaa
gtgatactggagcgggttcggcaattggacgctctggcgggccagcaacagacgctccat
cggcaactcggtgatctcgaaaaacagggcttggaagccaaggccgccaaagaacagacc
gaaaaccagcgcaaaacccttgagcttgcctggcatacaggtcaggccgccatgttggca
aatgaactcaagcaaggcagtccatgcccggtttgtggcagctgtagccacccaagcccc
gcgcaaaccgaggtgcaactgccatcgcagcaagagttggagtcggccaggctgttggag
caacaggctctgcagcagtaccaggaaacccgcagcaactatagccacaccaagtcccgc
ttaaaggagctggaacagcaattcaggcagttgagtgaacagctgggggaagccgcgacc
caagccccggctgcccatgaacagcatttgcagtcgctcagactagcccttgccgatgcc
agctcagccagtgaatcactgcataaactcaggggcgatatagcaaaggccgagcaagcc
tggcatacccagcggcagacaaccgagcagctcgcccggcaggtggaagaggccaatcag
cgactcatccaacttactgaaaacaggaaggcaaccctggcggccatgcccaaggcactt
gccgaactggagcatccccgagccctcagtgcccggttggaggcaatcaatactttgctg
acctccatagccactgaacaggaaagcttggtatcggcgcatcaagaggcttccaatgaa
ttggcgcgggcaaaaggtgcggttcaggatacggctcagcaatatcaacgtgtcacaagc
cggctggcagaggccgatgctgagttttcccgggcgctgcaatcctccggttttgccgat
acagctgcccttgaggacgcatggcgcagtgagacacagcaacagtctcttgagcaggaa
attcaggactggcacaggcaaaggcacagtctcagggaacagttggcggcccagcaacgt
aaattgcaggagcggcaagcaccggaactggatgccctgacggcccaaaagtcggctgcc
gacgctcgctttcagcaatccgatgagcaatggatgcggctcaatgggcgcatgcaggag
ctcggcaatgccgccagacaattgcagcaggaagcggatagcgccagggcgctggacgcg
caatatgctctggtgggaactctggccgatgtggccaacggcaacagccagagcaaactc
agtctgcaacgctttgtcctgagcgtgctgcttgatgatgtgttgcgagaggccagccag
cgcctgcaactgatgagtaagggccggtaccgtttgctgcgcaaggaagatagggccaag
ggtaacaaggcgtcgggactggagctggaggtggaagacgcctacagcggcaaggtgagg
gctgtggcaaccctcagtggcggcgaaagttttatggcggcgttgtcactggcgctgggc
ttgtccgatgtggtccaggcctacgccggggggataaaactcgacaccctgtttatcgac
gaaggtttcggcagtctggatcaggagtcgctggagatggctattcggaccctgatggat
ctgcaggccagcggccgcatgattggcgtcatttcccacgtctcggaaatgaaggagcag
ttgcagacccgtattgatgtgctcaaggccgccgccggcagtgaaattcgcctgcatctg
ccctag
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