Shewanella sedimentimangrovi: JYB85_07025
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Entry
JYB85_07025 CDS
T07846
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ssem
Shewanella sedimentimangrovi
Brite
KEGG Orthology (KO) [BR:
ssem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssem03032
]
JYB85_07025 (topA)
03400 DNA repair and recombination proteins [BR:
ssem03400
]
JYB85_07025 (topA)
Enzymes [BR:
ssem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
JYB85_07025 (topA)
DNA replication proteins [BR:
ssem03032
]
Prokaryotic type
DNA Topoisomerases
JYB85_07025 (topA)
DNA repair and recombination proteins [BR:
ssem03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
JYB85_07025 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_LysW
Zn_ribbon_recom
DUF2399
Motif
Other DBs
NCBI-ProteinID:
QSX38560
LinkDB
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Position
1650927..1653560
Genome browser
AA seq
877 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGKDFIVKSSVGHIRDLPTSSSSEGKTGAKSSADLKKMTA
DEKARYKKDKDQQALVARMGVNPEAGWRANYQILPGKEKVVKELQTLANDADQIFLATDL
DREGEAIAWHLQEVIGGDPSRYQRVVFNEITKSAIQDAFSHPASLNTNMVNAQQARRFLD
RVVGFMVSPLLWKKVARGLSAGRVQSVAVRLVVERESEIKAFVPEEFWDIHAALNTPKGQ
ALLMEVHRHLGAAFEPRNQAEAMAAVAELQHASFKVLEREDKATQSKPSAPFITSTLQQA
ASTRLGFGVKKTMMLAQRLYEAGHITYMRTDSTNLSQEALDSVRALIGDEFGAKYLPDAP
IRYGSKEGAQEAHEAIRPSDVKVSAVQLSDMERDAQRLYELIWRQFVACQMTPAQYDATR
LTVKAGDYELKANGRTLRFDGWTRVQPALKKKNEEDNTLPAVEVGESLTLDKLDPKQNFT
KPPARYSEASLVKELEKRGIGRPSTYATIISTIQDRGYVKVENRRFYAEKMGEIVSDRLV
HSFSELMSYDFTAGMEQTLDDVARGEREWKNVLDGFYKDFTAQLDKAEQEPDAGGMLPNE
MVLTEIPCPTCGRQMGIRTGTTGVFLGCSGYALPPKERCKTTMNLTPGEEAISEGDENAE
TNALRAKHRCNKCGTAMDSYLLDEKRKLHVCGNNPTCDGYEVEAGQFKLKGYEGPLLECD
RCGANMELKNGRFGKYFGCTNEACKNTRKLLKNGEAAPPKEDPIHLPELKCSKSDAYFVL
RDGAAGIFLAASTFPKSRETRAPLVEELRKYRELLWPKYLYLADAPTEDDEGNKTMVKFS
RKTKEQYVASEVDGKATGWIAHYDGKRWVSEAKKTKK
NT seq
2634 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcgctcgtcattgtcgaatcgccggccaaagccaagacaataaacaaatac
cttggcaaagatttcattgttaaatccagtgtgggtcacatacgtgatttgcctacatcc
tcctcctcggaaggcaaaacgggtgctaaatccagtgccgatctcaagaaaatgaccgcc
gatgaaaaggcccgttacaagaaggacaaggaccaacaggccctggtggcccgcatgggg
gtgaaccccgaggcgggctggcgtgccaactaccagatattgcctggtaaagaaaaggtg
gtaaaagaattacagacccttgccaacgatgccgatcaaatctttctggcaacggatttg
gaccgtgagggagaggccattgcctggcatttgcaggaagtcataggcggcgatccttca
cggtatcaaagggtagttttcaatgagatcaccaaaagtgccatccaggacgccttcagc
catcctgccagcctgaacaccaatatggtcaatgcccaacaggcccgtcgcttcctggac
cgggtggtgggttttatggtgtctcccttgctgtggaagaaggttgcccggggcctgtct
gccggacgggtgcagtccgtcgcagtgcgtttggtggttgagcgtgaaagtgaaatcaag
gcctttgtgccggaagagttttgggatattcacgctgccctgaatacgccaaaaggccag
gcattgctgatggaagttcatcgccatcttggtgcagcctttgaaccacgcaatcaggcc
gaggccatggctgcggtggccgaactgcaacatgccagcttcaaggtcttggagcgggaa
gataaggcgacccaaagcaagccttctgcgccctttattacctcaaccctgcagcaagcg
gcgagtacccgacttggctttggggtgaaaaagaccatgatgttggcccagcgtttgtac
gaagccggtcatatcacctatatgcgtaccgactctaccaacctcagccaggaagccctg
gacagcgtccgtgcactcattggtgacgagttcggtgccaaatacctgcccgatgccccc
atacgttatggcagtaaggaaggcgcccaggaggctcacgaagccatacggccttctgat
gtcaaggtcagtgcggtgcaactgagtgatatggaacgcgatgcacagcgcctctacgag
cttatttggcgacaatttgtggcctgtcagatgacacctgcccagtatgatgccaccagg
cttacggttaaggccggtgattatgagctcaaggccaatggccgcaccctgaggtttgat
ggttggacccgagtgcaaccggcgctgaagaaaaagaacgaggaagacaacaccctgccg
gcagtcgaggtgggtgaatcactcacgctggataagttggatcccaaacagaacttcacc
aagccaccggcccgctacagtgaagcctcgttggtgaaagaattggaaaagcgcggtata
gggcgtccttccacctatgccaccattatctctaccattcaggatcgcggttacgttaaa
gtggaaaaccgtcgtttttatgccgagaaaatgggtgaaattgtcagtgaccgtctggta
cacagcttcagtgaactgatgagctatgactttaccgccggtatggaacagacactggat
gatgtggcccgcggtgagcgtgagtggaaaaacgtgctggatggtttttataaagacttt
accgcccagctcgacaaggcggagcaggagcccgatgccggtggtatgcttcccaatgag
atggtacttaccgagattccttgtcccacgtgcggcaggcaaatggggatccgcaccgga
acaaccggagtgttcctcggctgttcaggctatgcgttgccgccgaaggaaagatgcaag
accacaatgaacctgacgccgggcgaagaggctataagcgaaggtgatgaaaacgcggaa
accaatgcgctcagggccaagcatcgctgtaacaaatgcggtaccgcaatggacagttac
ctgcttgatgaaaagcgtaaactgcatgtgtgcggcaacaaccctacctgtgacggctat
gaggtggaagcgggccagttcaaactcaaggggtacgaaggaccgctattggaatgtgac
cgttgtggcgccaatatggagcttaaaaacggccgtttcggcaagtatttcggctgtacc
aatgaagcctgtaagaatactcgcaaactgctgaagaacggtgaggcagcgccaccgaag
gaagatcctattcatctgcccgaactcaagtgcagtaagtcggatgcttattttgtgttg
cgtgatggcgccgccggtatcttcctcgccgccagcaccttccccaaatcccgcgaaacc
cgggcgccgttggtggaagaactgcgcaaataccgtgagctgctgtggcctaaatatcta
tatctggccgatgctccgaccgaggatgatgaaggcaacaagaccatggtcaagttcagc
cgcaaaaccaaggagcaatatgttgcttccgaggtggacggcaaagccacgggttggata
gcccactatgatggcaagcgctgggtcagcgaagccaagaaaaccaagaagtaa
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